RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OR2M4Q96R27 311 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 KCNN3Q9UGI6 736 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 H0YGG7 62 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 SERPINA3P01011 423 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 LCN1P31025 176 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 NUDT1P36639 197 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 VEGFBP49765 207 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 AP2S1P53680 142 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ARF3P61204 181 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ACTC1P68032 377 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ACTA1P68133 377 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PUDPQ08623 228 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 GRK1Q15835 563 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PXDC1Q5TGL8 231 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 RPL13AP3Q6NVV1 102 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 APOOLQ6UXV4 268 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 OR11G2Q8NGC1 345 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 C1orf216Q8TAB5 229 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ZPLD1Q8TCW7 415 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 HRASLSQ9HDD0 168 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 IL23AQ9NPF7 189 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 DUSP22Q9NRW4 184 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 C2orf42Q9NWW7 574 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 COPZ2Q9P299 210 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 TP53BP1Q12888 1972 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PRSS38A1L453 326 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 OGG1O15527 345 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PEX14O75381 377 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 KHDRBS3O75525 346 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 RASGRP1O95267 797 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 GPR75O95800 540 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ALDOBP05062 364 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 RAB14P61106 215 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PPP2CBP62714 309 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PPP2CAP67775 309 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 STX4Q12846 297 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 COL28A1Q2UY09 1125 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 FHL5Q5TD97 284 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 STPG1Q5TH74 334 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC22A10Q63ZE4 541 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC35F2Q8IXU6 374 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF511Q8NB15 262 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 OR52R1Q8NGF1 315 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 SMIM4Q8WVI0 70 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 TSSK2Q96PF2 358 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 RBP7Q96R05 134 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 CNN2Q99439 309 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 TSPAN10Q9H1Z9 355 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 NCDNQ9UBB6 729 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 SCP2D1Q9UJQ7 156 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 TRAV1-2A0A0B4J238 106 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS10-NUDT3A0A1W2PQS6 291 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RGS11O94810 467 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 IFNA7P01567 189 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 SRMP19623 302 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 PSMB1P20618 241 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RAD52P43351 418 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ERVK-25P63136 954 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 OC90Q02509 493 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF761Q86XN6 746 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 UXS1Q8NBZ7 420 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 PLA2G2FQ9BZM2 168 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF436Q9C0F3 470 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 KIR3DX1Q9H7L2 352 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS6KB2Q9UBS0 482 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 VCANP13611 3396 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 A0A0B4J2E0 115 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 A0A1B0GVI7 797 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 A0A1B0GX12 115 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 TEX46H3BTG2 121 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 M0R233 179 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 SHOXO15266 292 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 CDC123O75794 336 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 UCHL1P09936 223 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 OR2T7P0C7T2 308 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS15P62841 145 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 GPR139Q6DWJ6 353 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ARHGAP11AQ6P4F7 1023 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 KIRREL2Q6UWL6 708 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 OR2T27Q8NH04 317 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 FAM3CQ92520 227 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RASD2Q96D21 266 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 NRIP3Q9NQ35 241 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RDH8Q9NYR8 311 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 MGAT4CQ9UBM8 478 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 UBQLN2Q9UHD9 624 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 SATB2Q9UPW6 733 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 PCDHGA9Q9Y5G4 932 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 LINC01553A4QN01 128 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 OR10H2O60403 315 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 BRINP1O60477 761 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 SMIM10L1P0DMW3 83 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 UGT2B7P16662 529 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS4Y1P22090 263 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 FAM53BQ14153 422 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ODF4Q2M2E3 257 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF613Q6PF04 617 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 CDH24Q86UP0 819 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 DNAAF1Q8NEP3 725 aa8.5□□□□□ -1.05
LIMCH1-215ENST00000512632 HGDQ93099 445 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms