RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TRAV17A0A0B4J275 112 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 LOC100130705A0A1B0GUX0 176 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 UNC119BA6NIH7 251 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 FAM166BA8MTA8 275 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 EFCAB9A8MZ26 197 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 FAM47E-STBD1D6RA91 191 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 KLRC4-KLRK1H3BQV0 150 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SOX14O95416 240 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CLIC3O95833 236 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CH25HO95992 272 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CELA3AP09093 270 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 ASAH2BP0C7U1 165 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 IMPDH2P12268 514 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CDH2P19022 906 aaPredicted RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 TCEA1P23193 301 aaKnown RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 MYF6P23409 242 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 GDF1P27539 372 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 RFC3P40938 356 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 RPS5P46782 204 aaKnown RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 GFRA1P56159 465 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CDK5Q00535 292 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 IL1RL1Q01638 556 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 C19orf57Q0VDD7 668 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 KEAP1Q14145 624 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 PTGES3Q15185 160 aaKnown RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 TAF11Q15544 211 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 LINC00303Q3SY05 128 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SYT14P1Q58G82 188 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 RNFT1Q5M7Z0 435 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 WLSQ5T9L3 541 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 C1orf140Q5VVS0 124 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SLX4IPQ5VYV7 408 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 TTC23Q5W5X9 447 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 C12orf73Q69YU5 71 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 C3orf33Q6P1S2 294 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 C5orf46Q6UWT4 87 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 THSD4Q6ZMP0 1018 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 Q6ZS92 163 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 YRDCQ86U90 279 aaKnown RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 MARVELD2Q8N4S9 558 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 LRRC17Q8N6Y2 441 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 RBMXL3Q8N7X1 1067 aaKnown RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 LRRC75AQ8NAA5 344 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 KDF1Q8NAX2 398 aaPredicted RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 OR4Q3Q8NH05 313 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 FBLIM1Q8WUP2 373 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SLC25A43Q8WUT9 341 aaPredicted RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 ARL5BQ96KC2 179 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 HRASLS5Q96KN8 279 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 ZNF570Q96NI8 536 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 POTEKPQ9BYX7 375 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 ENKD1Q9H0I2 346 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 FKRPQ9H9S5 495 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SLC25A19Q9HC21 320 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 QPCTLQ9NXS2 382 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 UBAP1Q9NZ09 502 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 RPH3AQ9Y2J0 694 aaPredicted RBP7.43□□□□□ -1.22
USP4-210ENST00000483212 HIF3AQ9Y2N7 669 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 PCDHGB7Q9Y5F8 929 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 ORC6Q9Y5N6 252 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 CHD8Q9HCK8 2581 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 PTPRQQ9UMZ3 2332 aa7.43□□□□□ -1.22
USP4-210ENST00000483212 SPENQ96T58 3664 aaKnown RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 URB1O60287 2271 aaKnown RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 TRAV27A0A087WT01 109 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 TMEM8BA6NDV4 472 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 LIPT2A6NK58 231 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 MKRN2OSH3BPM6 223 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 BHLHE40O14503 412 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 BCKDKO14874 412 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 MT-ATP6P00846 226 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 ITGB2P05107 769 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 PEPDP12955 493 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 GABRB1P18505 474 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 UQCRC1P31930 480 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 GGT2P36268 569 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 MAGEA5P43359 124 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 SLC9A3P48764 834 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 CLK1P49759 484 aaKnown RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 ISL1P61371 349 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 RAC1P63000 192 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 CXADRP78310 365 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 EFNB1P98172 346 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 PMP22Q01453 160 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 IL18R1Q13478 541 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 ZNF169Q14929 603 aaPredicted RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 ZNF239Q16600 458 aaKnown RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 CTU2Q2VPK5 515 aaKnown RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 WIPI1Q5MNZ9 446 aaPredicted RBP7.42□□□□□ -1.22
USP4-210ENST00000483212 FAM69AQ5T7M9 428 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 ZNF691Q5VV52 312 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 RAET1LQ5VY80 246 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 TMEM236Q5W0B7 351 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 LAIR2Q6ISS4 152 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 TRILQ7L0X0 811 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 GGNQ86UU5 652 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 CDK20Q8IZL9 346 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 FAM109AQ8N4B1 249 aa7.42□□□□□ -1.22
USP4-210ENST00000483212 ZADH2Q8N4Q0 377 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms