RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 IFT81Q8WYA0 676 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 BCL2L2Q92843 193 aaPredicted RBP12.47□□□□□ -0.41
HMGN1-208ENST00000443046 NAA11Q9BSU3 229 aaPredicted RBP12.47□□□□□ -0.41
HMGN1-208ENST00000443046 PIF1Q9H611 641 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 EXOSC3Q9NQT5 275 aaKnown RBP12.47□□□□□ -0.41
HMGN1-208ENST00000443046 ATAD3AQ9NVI7 634 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 PCDHGB4Q9UN71 923 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 SLC35A3Q9Y2D2 325 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 PCDHB14Q9Y5E9 798 aa12.47□□□□□ -0.41
HMGN1-208ENST00000443046 A0A1W2PPM1 405 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 TMEM114B3SHH9 223 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 B4DSR2 109 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 GLRA3O75311 464 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 FGF4P08620 206 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 MATN1P21941 496 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 HTR3AP46098 478 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 HILS1P60008 231 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 ACTG1P63261 375 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 CCDC153Q494R4 210 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 PRR31Q5SQ13 230 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 TYW3Q6IPR3 259 aaKnown RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 SYT10Q6XYQ8 523 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 C6orf120Q7Z4R8 191 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 LSRQ86X29 649 aaPredicted RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 OR9K2Q8NGE7 335 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 MIPOL1Q8TD10 442 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 MAGEE2Q8TD90 523 aaPredicted RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 UBASH3BQ8TF42 649 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 WDR60Q8WVS4 1066 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 PMM1Q92871 262 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 ZG16BQ96DA0 208 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 ZNF385AQ96PM9 386 aaKnown RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 ZNF317Q96PQ6 595 aaPredicted RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 KCNS3Q9BQ31 491 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 SF3B5Q9BWJ5 86 aaKnown RBP12.46□□□□□ -0.41
HMGN1-208ENST00000443046 SEC61A2Q9H9S3 476 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 TMEM45AQ9NWC5 275 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 GIMAP2Q9UG22 337 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 OSGIN1Q9UJX0 560 aa12.46□□□□□ -0.41
HMGN1-208ENST00000443046 TMED7-TICAM2A0A0A6YYA0 188 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 TMEM72A0PK05 275 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 hCG_2039718K7EN88 272 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 LYPLA1O75608 230 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 IGKV3-15P01624 115 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 CPA3P15088 417 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 IFNGR1P15260 489 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 CDH2P19022 906 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 RYKP34925 604 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 THBS4P35443 961 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 SLC1A3P43003 542 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 MAP2K6P52564 334 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 POU3F1Q03052 451 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 CKAP4Q07065 602 aaKnown RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 XKR7Q5GH72 579 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 VHLLQ6RSH7 139 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 LINGO2Q7L985 606 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 AAED1Q7RTV5 226 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 ABHD12BQ7Z5M8 362 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 GLCCI1Q86VQ1 547 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 HOMEZQ8IX15 550 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 CNPY4Q8N129 248 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 KRTCAP2Q8N6L1 136 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 GCDHQ92947 438 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 DDIT4LQ96D03 193 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 AURKBQ96GD4 344 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 RACGAP1Q9H0H5 632 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 NELFAQ9H3P2 528 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 POLE3Q9NRF9 147 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 PSMC3IPQ9P2W1 217 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-208ENST00000443046 TMED7Q9Y3B3 224 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 FIS1Q9Y3D6 152 aa12.45□□□□□ -0.42
HMGN1-208ENST00000443046 ZC3H12DA2A288 527 aaKnown RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 AQP7P3A6NL99 342 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 TMEM233B4DJY2 109 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 LYNX1G3V0Z9 82 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 NR5A2O00482 541 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 PIP5K1BO14986 540 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 RIPK2O43353 540 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 LGI1O95970 557 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 CHEK2O96017 543 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 ERCC1P07992 297 aaPredicted RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 LYNX1P0DP58 116 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 HOXB1P14653 301 aaPredicted RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 CCNA2P20248 432 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 NPR2P20594 1047 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 MAPK1P28482 360 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 CRHR1P34998 444 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 IDH2P48735 452 aaKnown RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 P2RY4P51582 365 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 KCNJ10P78508 379 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 FUT5Q11128 374 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 SCGB2A2Q13296 93 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 CCNIQ14094 377 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 ADRM1Q16186 407 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 FRRS1Q6ZNA5 592 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 TRMT10CQ7L0Y3 403 aaKnown RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 PEG10Q86TG7 708 aaKnown RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 MYPOPQ86VE0 399 aaPredicted RBP12.44□□□□□ -0.42
HMGN1-208ENST00000443046 SVOPLQ8N434 492 aa12.44□□□□□ -0.42
HMGN1-208ENST00000443046 TMEM99Q8N816 258 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms