RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 TCF15Q12870 199 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 CBFBQ13951 182 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 C3orf38Q5JPI3 329 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 ZNF362Q5T0B9 420 aaPredicted RBP19.21■□□□□ 0.67
PTPRF-207ENST00000436724 HES3Q5TGS1 186 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 CXXC5Q7LFL8 322 aaKnown RBP19.21■□□□□ 0.67
PTPRF-207ENST00000436724 CT55Q8WUE5 264 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 TMCO6Q96DC7 493 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 SLC19A3Q9BZV2 496 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 DAPK2Q9UIK4 370 aa19.21■□□□□ 0.67
PTPRF-207ENST00000436724 MCIDASD6RGH6 385 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 OR7A10O76100 309 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 GRK5P34947 590 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 UGT2B10P36537 528 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 CD97P48960 835 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 QPRTQ15274 297 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 CSRP2Q16527 193 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 TRIM16LQ309B1 348 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 C10orf53Q8N6V4 93 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 GPR119Q8TDV5 335 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 NEURL2Q9BR09 285 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 TMEM43Q9BTV4 400 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 DCSTAMPQ9H295 470 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 TCFL5Q9UL49 500 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 ZC3H12DA2A288 527 aaKnown RBP19.2■□□□□ 0.66
PTPRF-207ENST00000436724 AIREO43918 545 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 GADD45AP24522 165 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 LTBQ06643 244 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 C1QL3Q5VWW1 255 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 CYB561A3Q8NBI2 242 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 NPAS1Q99742 590 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 ZPBPQ9BS86 351 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 DDA1Q9BW61 102 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 SPRY4Q9C004 299 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 ZNF160Q9HCG1 818 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 CMC2Q9NRP2 79 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 FAM86C1Q9NVL1 165 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 ADAM18Q9Y3Q7 739 aa19.2■□□□□ 0.66
PTPRF-207ENST00000436724 ITGA10O75578 1167 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NOS3P29474 1203 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 SLC6A6P31641 620 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 TRIP6Q15654 476 aaKnown RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ZNF74Q16587 644 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NXNL2Q5VZ03 156 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 C9orf43Q8TAL5 461 aaPredicted RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 CCNL2Q96S94 520 aaPredicted RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 MMP25Q9NPA2 562 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 KLRF1Q9NZS2 232 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 MED11Q9P086 117 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NCDNQ9UBB6 729 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ZNF337Q9Y3M9 751 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NDUFB2O95178 105 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 GP1BBP13224 206 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NAGAP17050 411 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ENDOUP21128 410 aaKnown RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 TGM1P22735 817 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 CXCR1P25024 350 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 OTX2P32243 289 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 SOX3P41225 446 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 RPS5P46782 204 aaKnown RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 CLK1P49759 484 aaKnown RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ETV1P50549 477 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NUBP1P53384 320 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ARMCX4Q5H9R4 360 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 OR4F15Q8NGB8 312 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 SLC22A8Q8TCC7 542 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 PTP4A1Q93096 173 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 TAAR8Q969N4 342 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 ERMAPQ96PL5 475 aaPredicted RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 FBXL4Q9UKA2 621 aa19.19■□□□□ 0.66
PTPRF-207ENST00000436724 DIMT1Q9UNQ2 313 aaKnown RBP19.19■□□□□ 0.66
PTPRF-207ENST00000436724 NSG1A0A0A6YYJ2 146 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 SNTNA6NMZ2 147 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 BLOC1S5-TXNDC5H3BN57 136 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 RAB36O95755 333 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 CLUP10909 449 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 TMED10P49755 219 aaKnown RBP19.18■□□□□ 0.66
PTPRF-207ENST00000436724 CRMP1Q14194 572 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 NUP54Q7Z3B4 507 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 MOSPD2Q8NHP6 518 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 RFKQ969G6 155 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 CRELD1Q96HD1 420 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 NANSQ9NR45 359 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 TAS2R10Q9NYW0 307 aa19.18■□□□□ 0.66
PTPRF-207ENST00000436724 CCDC187A0A096LP49 1063 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 TNFRSF10AO00220 468 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 FBXO45P0C2W1 286 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 PEPDP12955 493 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 RPL4P36578 427 aaKnown RBP19.17■□□□□ 0.66
PTPRF-207ENST00000436724 RPS4XP62701 263 aaKnown RBP19.17■□□□□ 0.66
PTPRF-207ENST00000436724 TUBA1BP68363 451 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 C17orf67Q0P5P2 114 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 RAB40BQ12829 278 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 INPP5JQ15735 1006 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-207ENST00000436724 EXT1Q16394 746 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 KLHL22Q53GT1 634 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 TUBA1AQ71U36 451 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 PRSS33Q8NF86 280 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 MCFD2Q8NI22 146 aa19.17■□□□□ 0.66
PTPRF-207ENST00000436724 TTC9Q92623 222 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms