RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 TMED7-TICAM2A0A0A6YYA0 188 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 CCDC160A6NGH7 325 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 SNTNA6NMZ2 147 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 CDRT15L2A8MXV6 281 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 ADRA2AP08913 450 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 TSPAN19P0C672 248 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 PEPDP12955 493 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 PRKCAP17252 672 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 DCKP27707 260 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 PRPS1P60891 318 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 LTBQ06643 244 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 ANKDD1AQ495B1 522 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 RNLSQ5VYX0 342 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 IL20RBQ6UXL0 311 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 CLVS1Q8IUQ0 354 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 C9orf43Q8TAL5 461 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 ZNF420Q8TAQ5 688 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 PAQR8Q8TEZ7 354 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 NKD1Q969G9 470 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 MOGAT1Q96PD6 335 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 GPX7Q96SL4 187 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 HINT3Q9NQE9 182 aaKnown RBP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 NANSQ9NR45 359 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.04□□□□□ -0.16
LIMS1-202ENST00000338045 TMED7Q9Y3B3 224 aa14.04□□□□□ -0.16
LIMS1-202ENST00000338045 TRAV36DV7A0A075B6V5 113 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 SUSD5O60279 629 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 PPP1R3DO95685 299 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 CEACAM1P13688 526 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 SLC25A53Q5H9E4 307 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 CCDC81Q6ZN84 652 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 DTX1Q86Y01 620 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 MARCH9Q86YJ5 346 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 RAB43Q86YS6 212 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 STK35Q8TDR2 534 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 RFKQ969G6 155 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 TAAR8Q969N4 342 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 DOK1Q99704 481 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 PTDSS2Q9BVG9 487 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 FKRPQ9H9S5 495 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 CHRNA9Q9UGM1 479 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 ZNF229Q9UJW7 825 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 MPDZO75970 2070 aa14.03□□□□□ -0.16
LIMS1-202ENST00000338045 TMEM72A0PK05 275 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 MCIDASD6RGH6 385 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 SLC35F1Q5T1Q4 408 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 ARHGAP11AQ6P4F7 1023 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 C5orf46Q6UWT4 87 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 DPY19L2P2Q6ZN68 376 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 FADS6Q8N9I5 356 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 OR2M3Q8NG83 312 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 ISOC1Q96CN7 298 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 TMEM80Q96HE8 168 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 NRIP3Q9NQ35 241 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 ITGB1BP2Q9UKP3 347 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 MRPS18BQ9Y676 258 aaKnown RBP14.02□□□□□ -0.16
LIMS1-202ENST00000338045 COMMD3-BMI1R4GMX3 469 aa14.02□□□□□ -0.16
LIMS1-202ENST00000338045 ZNF292O60281 2723 aa14.02□□□□□ -0.17
LIMS1-202ENST00000338045 ZC3H12DA2A288 527 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 A8MVM7 634 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 ARPC3O15145 178 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 SLC25A12O75746 678 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 BGLAPP02818 100 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 LCKP06239 509 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 ADORA3P0DMS8 318 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CCNA2P20248 432 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 HTR1FP30939 366 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 UQCRC1P31930 480 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 APOBEC1P41238 236 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 MTNR1AP48039 350 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CDH11P55287 796 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 RAB40BQ12829 278 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 KLHL22Q53GT1 634 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CCDC92Q53HC0 331 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 GPR107Q5VW38 600 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 IGF2-ASQ6U949 168 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 ARSKQ6UWY0 536 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CXXC5Q7LFL8 322 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CPOQ8IVL8 374 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 TMEM156Q8N614 296 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 WDSUB1Q8N9V3 476 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 LRRC75AQ8NAA5 344 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 PSMF1Q92530 271 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 CRELD1Q96HD1 420 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 SGCZQ96LD1 299 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 TAPBPLQ9BX59 468 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 ANGPTL4Q9BY76 406 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 TMEM165Q9HC07 324 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 PROK2Q9HC23 129 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 FGF20Q9NP95 211 aaPredicted RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 DIMT1Q9UNQ2 313 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 IRGMA1A4Y4 181 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 MT-ATP6P00846 226 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 PTHP01270 115 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 APEHP13798 732 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 HK1P19367 917 aa14.01□□□□□ -0.17
LIMS1-202ENST00000338045 RPS5P46782 204 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 ST13P50502 369 aaKnown RBP14.01□□□□□ -0.17
LIMS1-202ENST00000338045 MAP2K6P52564 334 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms