RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TUSC2O75896 110 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MPIG6BO95866 241 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NECTIN1Q15223 517 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SMN1Q16637 294 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GPR33Q49SQ1 333 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PLEKHS1Q5SXH7 462 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SHFQ7M4L6 423 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SLC47A2Q86VL8 602 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GID4Q8IVV7 300 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZC3HAV1LQ96H79 300 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 REEP2Q9BRK0 252 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ENKD1Q9H0I2 346 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ARL5AQ9Y689 179 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MEIKINA0A087WXM9 373 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DAPL1A0PJW8 107 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 C1QTNF3-AMACRE9PGA6 284 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BMP6P22004 513 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM8P31997 349 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GPR1P46091 355 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NPBWR1P48145 328 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CLDN12P56749 244 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ERVPABLB-1P60509 514 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 AKR1C1Q04828 323 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SRSF6Q13247 344 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 B3GLCTQ6Y288 498 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SP8Q8IXZ3 490 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ENTHD1Q8IYW4 607 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MUC20Q8N307 709 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GDPD1Q8N9F7 314 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF599Q96NL3 588 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DEFB118Q96PH6 123 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GPER1Q99527 375 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TEAD3Q99594 435 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ABCG5Q9H222 651 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF586Q9NXT0 402 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PADI3Q9ULW8 664 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 AK6Q9Y3D8 172 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NCOA3Q9Y6Q9 1424 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CST3P01034 146 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SULT1A3P0DMM9 295 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SULT1A4P0DMN0 295 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CHRNB2P17787 502 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TACR2P21452 398 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 EN1Q05925 392 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GLYR1Q49A26 553 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ADNP2Q6IQ32 1131 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MFSD5Q6N075 450 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LINGO4Q6UY18 593 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR5M9Q8NGP3 310 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR1N2Q8NGR9 330 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RSPRY1Q96DX4 576 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SRD5A3Q9H8P0 318 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NMUR1Q9HB89 426 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CSNK1G1Q9HCP0 422 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FAM49BQ9NUQ9 324 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ING1Q9UK53 422 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RASD1Q9Y272 281 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TPRKBQ9Y3C4 175 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MTORP42345 2549 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DOCK1Q14185 1865 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NRP1O14786 923 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MSTNO14793 375 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LANCL1O43813 399 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 IFNW1P05000 195 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 IL13RA1P78552 427 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SPOCK1Q08629 439 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GTDC1Q4AE62 458 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF770Q6IQ21 691 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MED27Q6P2C8 311 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SLC16A12Q6ZSM3 486 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TTC9Q92623 222 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF347Q96SE7 839 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 APMAPQ9HDC9 416 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GDE1Q9NZC3 331 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RNF181Q9P0P0 153 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 UFC1Q9Y3C8 167 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 A0A087WZ62 844 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 C1orf226A1L170 272 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LIPT2A6NK58 231 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 KLF11O14901 512 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RAMP3O60896 148 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ADORA3P0DMS8 318 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LYL1P12980 280 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BPIP17213 487 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NSG1P42857 185 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CXCR3P49682 368 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR12D2P58182 307 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PAFAH1B2P68402 229 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CD47Q08722 323 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GRM2Q14416 872 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FAM182AQ5T1J6 154 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TFAP2EQ6VUC0 442 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GPRIN3Q6ZVF9 776 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 Q6ZVU0 165 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ASCL5Q7RTU5 278 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LYSMD3Q7Z3D4 306 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 KMT2EQ8IZD2 1858 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 POC1AQ8NBT0 407 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PXT1Q8NFP0 134 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DNASE1L2Q92874 299 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms