RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 EFNB2P52799 333 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 YBEYP58557 167 aaPredicted RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 NUCB2P80303 420 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 HTD2P86397 168 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TGFBR3Q03167 851 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 ZNF763Q0D2J5 394 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 ATXN7L3Q14CW9 347 aaPredicted RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 NRF1Q16656 503 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TPD52L1Q16890 204 aaPredicted RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 SLC25A34Q6PIV7 304 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 C6orf89Q6UWU4 347 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 PPP1R42Q7Z4L9 355 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 HMGN2P46Q86SG4 172 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 ZNF547Q8IVP9 402 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 MISPQ8IVT2 679 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 ELMOD2Q8IZ81 293 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TTC5Q8N0Z6 440 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 OTUD6BQ8N6M0 293 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 OR56B1Q8NGI3 324 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 SDSLQ96GA7 329 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 KCNK16Q96T55 309 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TSG101Q99816 390 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 RIOK1Q9BRS2 568 aaKnown RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 FICDQ9BVA6 458 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 LPAR2Q9HBW0 351 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 WFDC1Q9HC57 220 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 NGBQ9NPG2 151 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 POLE3Q9NRF9 147 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 YAE1D1Q9NRH1 226 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 AATFQ9NY61 560 aaKnown RBP eCLIP1.9□□□□□ -2.11
CD44-239ENST00000639002 RDH8Q9NYR8 311 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TAS2R3Q9NYW6 316 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 RABL2AQ9UBK7 228 aaPredicted RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 HPCAL4Q9UM19 191 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 MGAT4BQ9UQ53 548 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 PIN4Q9Y237 131 aaKnown RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 ASF1AQ9Y294 204 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 USP24Q9UPU5 2620 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 PIKFYVEQ9Y2I7 2098 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 FAM230AA0A1W2PPH8 454 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CLRN2A0PK11 232 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CCDC169A6NNP5 214 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 H0YC42 278 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 PEX11AO75192 247 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 SCGB2A1O75556 95 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 PALMO75781 387 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 RBBP9O75884 186 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 SNX4O95219 450 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CA3P07451 260 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 PLEKP08567 350 aaPredicted RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 PAICSP22234 425 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 DPP4P27487 766 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CCND2P30279 289 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 ANP32AP39687 249 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 SPP2Q13103 211 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 TMED1Q13445 227 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CHI3L2Q15782 390 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 RSPO1Q2MKA7 263 aaPredicted RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 KLF17Q5JT82 389 aaPredicted RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 RGS9BPQ6ZS82 235 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 ACOT7LQ6ZUV0 252 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 CENPUQ71F23 418 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 MRPL43Q8N983 215 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 DQX1Q8TE96 717 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 ZNF606Q8WXB4 792 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 FRZBQ92765 325 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 SAMD8Q96LT4 415 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 TBCDQ9BTW9 1192 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 GSDMCQ9BYG8 508 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 PLA2G12AQ9BZM1 189 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 NT5C3AQ9H0P0 336 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 VPS37BQ9H9H4 285 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 LIN28AQ9H9Z2 209 aaKnown RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 SOHLH2Q9NX45 425 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 TREM2Q9NZC2 230 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 NINJ2Q9NZG7 142 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 COX16Q9P0S2 106 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 NUP214P35658 2090 aaPredicted RBP1.89□□□□□ -2.11
CD44-239ENST00000639002 ATP8B3O60423 1300 aa1.89□□□□□ -2.11
CD44-239ENST00000639002 RGSL1A5PLK6 1076 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 HELTA6NFD8 242 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 GPR89AB7ZAQ6 455 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 SMPD2O60906 423 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 SS18L1O75177 396 aaPredicted RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 VPS26AO75436 327 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 TRIM16O95361 564 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 OPN1MWP04001 364 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 DCNP07585 359 aaKnown RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 GIPP09681 153 aaPredicted RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 GPR89BP0CG08 455 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 OPN1MW2P0DN77 364 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 OPN1MW3P0DN78 364 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 HNF1AP20823 631 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 DNAJB1P25685 340 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 PSMA2P25787 234 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 IFNAR2P48551 515 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 NMUP48645 174 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 SULT1E1P49888 294 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 PLK1P53350 603 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms