RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ECT2Q9H8V3 914 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 RDH8Q9NYR8 311 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 ATXN10Q9UBB4 475 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 OR12D3Q9UGF7 316 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 MOSPD1Q9UJG1 213 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 PIN4Q9Y237 131 aaKnown RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 OARD1Q9Y530 152 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 MROH7-TTC4A0A0A0MT08 1334 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 IGHV3OR16-13A0A075B7E8 117 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 TM7SF2O76062 418 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CTDNEP1O95476 244 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 GNA14O95837 355 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 OPN1LWP04000 364 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 RHOXF2BP0C7M4 288 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 GAP43P17677 238 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CYP2B6P20813 491 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 ATP6V1B2P21281 511 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CYP2F1P24903 491 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CD80P33681 288 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 ATP6V1E1P36543 226 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 SLC26A3P40879 764 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 LEPP41159 167 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 KLK7P49862 253 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CRISP3P54108 245 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 HSF2Q03933 536 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 RAB40BQ12829 278 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 PSG5Q15238 335 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CHRFAM7AQ494W8 412 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 ABCA11PQ4W5N1 156 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 BOLA3Q53S33 107 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 NIPAL3Q6P499 406 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CCDC137Q6PK04 289 aaKnown RBP1.48□□□□□ -2.17
VPS35-207ENST00000568191 UNC5DQ6UXZ4 953 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 ACOT7LQ6ZUV0 252 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 CATSPER4Q7RTX7 472 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 MISPQ8IVT2 679 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 GCNT2Q8N0V5 402 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 ZNF619Q8N2I2 560 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 KIR3DL3Q8N743 410 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 C15orf54Q8N8G6 183 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 MRPL43Q8N983 215 aaKnown RBP1.48□□□□□ -2.17
VPS35-207ENST00000568191 CATSPER1Q8NEC5 780 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 DENND6BQ8NEG7 585 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 OR10G2Q8NGC3 310 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 GIMAP1Q8WWP7 306 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 RPL3LQ92901 407 aaKnown RBP1.48□□□□□ -2.17
VPS35-207ENST00000568191 SLC6A7Q99884 636 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 DUSP16Q9BY84 665 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 SELENOIQ9C0D9 397 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 NAT10Q9H0A0 1025 aaKnown RBP1.48□□□□□ -2.17
VPS35-207ENST00000568191 VCPKMTQ9H867 229 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 DBNDD1Q9H9R9 158 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 VAT1LQ9HCJ6 419 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 SIGLEC8Q9NYZ4 499 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 WARS2Q9UGM6 360 aaKnown RBP1.48□□□□□ -2.17
VPS35-207ENST00000568191 KIF25Q9UIL4 384 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 MGAT4BQ9UQ53 548 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 SPACA6W5XKT8 324 aa1.48□□□□□ -2.17
VPS35-207ENST00000568191 IGLV11-55A0A075B6I3 123 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 G3V4G9 280 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 PRKYO43930 277 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 SSX5O60225 188 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 N4BP1O75113 896 aaKnown RBP1.47□□□□□ -2.17
VPS35-207ENST00000568191 SEC22BO75396 215 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 LGI1O95970 557 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 RETP07949 1114 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 CISD3P0C7P0 127 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 TPSB2P20231 275 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 DNAJB1P25685 340 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 BTCP35070 178 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 PRKXP51817 358 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 KPNA2P52292 529 aaKnown RBP1.47□□□□□ -2.17
VPS35-207ENST00000568191 NUCB2P80303 420 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 REG3AQ06141 175 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 ZNF763Q0D2J5 394 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 TPSAB1Q15661 275 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 FAM83EQ2M2I3 478 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 NSUN5P1Q3KNT7 163 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 C12orf60Q5U649 245 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 Q5W150 140 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 ATL3Q6DD88 541 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 C11orf71Q6IPW1 123 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 C16orf62Q7Z3J2 963 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 TMEM17Q86X19 198 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 PCP2Q8IVA1 136 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 MMAAQ8IVH4 418 aaKnown RBP1.47□□□□□ -2.17
VPS35-207ENST00000568191 MYOCDQ8IZQ8 938 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 OR6C4Q8NGE1 309 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 NDRG1Q92597 394 aaKnown RBP1.47□□□□□ -2.17
VPS35-207ENST00000568191 ARPC1AQ92747 370 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 RMI2Q96E14 147 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 TIMD4Q96H15 378 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 AKR1E2Q96JD6 320 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 C4orf36Q96KX1 117 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 C12orf66Q96MD2 445 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 NDFIP1Q9BT67 221 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 RHBGQ9H310 441 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 SLC25A37Q9NYZ2 338 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 DEC1Q9P2X7 70 aa1.47□□□□□ -2.17
VPS35-207ENST00000568191 CHRNA9Q9UGM1 479 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms