RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ADAM19Q9H013 955 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 RAD21L1Q9H4I0 556 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 ARMC7Q9H6L4 198 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 INTS9Q9NV88 658 aaKnown RBP18.36■□□□□ 0.53
CLN3-219ENST00000565778 CCDC167Q9P0B6 97 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 DSPPQ9NZW4 1301 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 IGKV3D-15A0A087WSY6 115 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 ZNF716A6NP11 495 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 EIF1BO60739 113 aaKnown RBP18.35■□□□□ 0.53
CLN3-219ENST00000565778 EDNRAP25101 427 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 COPZ1P61923 177 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 SLC35A1P78382 337 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 STK11Q15831 433 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 ZSWIM7Q19AV6 140 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 ZNF836Q6ZNA1 936 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 FUNDC1Q8IVP5 155 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 LRRC75A-AS1Q8N1F1 130 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 CLIP4Q8N3C7 705 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 CADM2Q8N3J6 435 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 ESRP2Q9H6T0 727 aaKnown RBP18.35■□□□□ 0.53
CLN3-219ENST00000565778 PRDM4Q9UKN5 801 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 ZNF443Q9Y2A4 671 aaPredicted RBP18.35■□□□□ 0.53
CLN3-219ENST00000565778 IFT52Q9Y366 437 aa18.35■□□□□ 0.53
CLN3-219ENST00000565778 A0A096LPI6 279 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 HMGB1P1B2RPK0 211 aaPredicted RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 MRPL33O75394 65 aaKnown RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 CNOT4O95628 575 aaKnown RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 IGHV3-9P01782 118 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 THBS1P07996 1170 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 NUDT7P0C024 238 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 IMPDH2P12268 514 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 NCF2P19878 526 aaPredicted RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 IGHV1-2P23083 117 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 ACAA2P42765 397 aaKnown RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 MRPL19P49406 292 aaKnown RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 FBXW9Q5XUX1 488 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 BLOC1S3Q6QNY0 202 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 AKAP1Q92667 903 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLN3-219ENST00000565778 APH1AQ96BI3 265 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 MUCL1Q96DR8 90 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 SPDL1Q96EA4 605 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 PERPQ96FX8 193 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 TMEM204Q9BSN7 226 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 SPATA9Q9BWV2 254 aa18.34■□□□□ 0.53
CLN3-219ENST00000565778 ARGLU1Q9NWB6 273 aaPredicted RBP18.34■□□□□ 0.53
CLN3-219ENST00000565778 ZC3H12DA2A288 527 aaKnown RBP18.33■□□□□ 0.52
CLN3-219ENST00000565778 C5orf58C9J3I9 102 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 NR5A2O00482 541 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 HS3ST1O14792 307 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 CLOCKO15516 846 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 RAMP1O60894 148 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 CD3EP07766 207 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 H3F3AP84243 136 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 FADDQ13158 208 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 AGKQ53H12 422 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 ZNF311Q5JNZ3 666 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 NCMAPQ5T1S8 102 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 WBP2NLQ6ICG8 309 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 LSRQ86X29 649 aaPredicted RBP18.33■□□□□ 0.52
CLN3-219ENST00000565778 TMEM171Q8WVE6 324 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 MAL2Q969L2 176 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 POTEKPQ9BYX7 375 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 GSX1Q9H4S2 264 aaPredicted RBP18.33■□□□□ 0.52
CLN3-219ENST00000565778 DLL4Q9NR61 685 aa18.33■□□□□ 0.52
CLN3-219ENST00000565778 CIB4A0PJX0 185 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 CCT8L1PA6NM43 557 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 PRG2P13727 222 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 GGT1P19440 569 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 NTF4P34130 210 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 IDUAP35475 653 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 SLC16A1P53985 500 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 CEACAM7Q14002 265 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 PPA1Q15181 289 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 Q5PR19 223 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 RNF220Q5VTB9 566 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 KRTAP1-3Q8IUG1 177 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 ZNF433Q8N7K0 673 aaPredicted RBP18.32■□□□□ 0.52
CLN3-219ENST00000565778 ZNF611Q8N823 705 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 A4GALTQ9NPC4 353 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 PARPBPQ9NWS1 579 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 SLAMF8Q9P0V8 285 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 RNF115Q9Y4L5 304 aa18.32■□□□□ 0.52
CLN3-219ENST00000565778 PGM3O95394 542 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 GPIP06744 558 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 ADSLP30566 484 aaPredicted RBP18.31■□□□□ 0.52
CLN3-219ENST00000565778 FAPQ12884 760 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 BNIP2Q12982 314 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 OR7A5Q15622 319 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 PAGE3Q5JUK9 113 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 TIMM23BQ5SRD1 257 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 P2RY8Q86VZ1 359 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 BBS10Q8TAM1 723 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 CKAP2Q8WWK9 683 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 THOC1Q96FV9 657 aaKnown RBP18.31■□□□□ 0.52
CLN3-219ENST00000565778 C18orf12Q96KH6 178 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 VIPAS39Q9H9C1 493 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 BCL2L10Q9HD36 194 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 ASB6Q9NWX5 421 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 SLC25A37Q9NYZ2 338 aa18.31■□□□□ 0.52
CLN3-219ENST00000565778 FREM1Q5H8C1 2179 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms