RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TEX13CA0A0J9YWL9 993 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 DOK2O60496 412 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 MED26O95402 600 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 LCKP06239 509 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 S1PR1P21453 382 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 CLDN15P56746 228 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 PRPS1P60891 318 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 TMEM44Q2T9K0 475 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 PRTGQ2VWP7 1150 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 TRIQKQ629K1 86 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 QSOX2Q6ZRP7 698 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 PSD4Q8NDX1 1056 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 SETD6Q8TBK2 473 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 SARAFQ96BY9 339 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 TMEM45AQ9NWC5 275 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 NKIRAS2Q9NYR9 191 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 TESQ9UGI8 421 aaKnown RBP8.48□□□□□ -1.05
VPS39-205ENST00000562258 DUSP13Q9UII6 198 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ZNF407Q9C0G0 2248 aa8.48□□□□□ -1.05
VPS39-205ENST00000562258 ACOX3O15254 700 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 RASAL1O95294 804 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 AZGP1P25311 298 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 EIF1P41567 113 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 P2RX1P51575 399 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MC2RQ01718 297 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ILKQ13418 452 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 DESI1Q6ICB0 168 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SLC35D2Q76EJ3 337 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CCDC80Q76M96 950 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 LSM14AQ8ND56 463 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 OR5W2Q8NH69 310 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GOT1L1Q8NHS2 421 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 PRR7Q8TB68 274 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ROBO4Q8WZ75 1007 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 UFD1Q92890 307 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 STACQ99469 402 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SAP130Q9H0E3 1048 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 NDUFA13Q9P0J0 144 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CHRNA9Q9UGM1 479 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ADAM30Q9UKF2 790 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZFC3H1O60293 1989 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 CCDC88CQ9P219 2028 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 C19orf67A6NJJ6 358 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 M0R082 166 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ATXN7O15265 892 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 IGLV3-19P01714 112 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CSTBP04080 98 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 GP1BAP07359 652 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 OSMP13725 252 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 UQCRC1P31930 480 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 KRR1Q13601 381 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 DGUOKQ16854 277 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZBED5Q49AG3 693 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SWT1Q5T5J6 900 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 C1orf140Q5VVS0 124 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZNF417Q8TAU3 575 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 INTS12Q96CB8 462 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 FAM71F1Q96KD3 344 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZNF587Q96SQ5 575 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 GPR87Q9BY21 358 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SYT4Q9H2B2 425 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GORASP2Q9H8Y8 452 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SIDT1Q9NXL6 827 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 EMC3Q9P0I2 261 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 PDCD11Q14690 1871 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 NOTCH3Q9UM47 2321 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 DLGAP3O95886 979 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 POU3F4P49335 361 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 PNLIPRP2P54317 469 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SOX8P57073 446 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 DEFA1P59665 94 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 DEFA3P59666 94 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 INSM1Q01101 510 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 GLO1Q04760 184 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MLC1Q15049 377 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 SAXO2Q658L1 398 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ASB18Q6ZVZ8 466 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 KRT74Q7RTS7 529 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GRINAQ7Z429 371 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MISPQ8IVT2 679 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CARFQ8N187 725 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ACBD7Q8N6N7 88 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 UTP4Q969X6 686 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 Q96M85 177 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZFP3Q96NJ6 502 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MCUBQ9NWR8 336 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 FIGNL2A6NMB9 653 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 A8MVM7 634 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CD36P16671 472 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 MTNR1AP48039 350 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GIPRP48546 466 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 COX10Q12887 443 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 PDE7AQ13946 482 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ZXDCQ2QGD7 858 aaPredicted RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 KLHL26Q53HC5 615 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 ARMCX4Q5H9R4 360 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 RBM48Q5RL73 367 aaKnown RBP8.47□□□□□ -1.05
VPS39-205ENST00000562258 RPL13AP3Q6NVV1 102 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 CBLN3Q6UW01 205 aa8.47□□□□□ -1.05
VPS39-205ENST00000562258 GDF7Q7Z4P5 450 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms