RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PTGS2P35354 604 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 TDHQ8IZJ6 230 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 ZFPM2Q8WW38 1151 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 IRF2BPLQ9H1B7 796 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 ZNF224Q9NZL3 707 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 PCYT1BQ9Y5K3 369 aaPredicted RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 GALR3O60755 368 aaPredicted RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 NTN1O95631 604 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 HOXD12P35452 270 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 TGFBR2P37173 567 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 EEF1A2Q05639 463 aaKnown RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 TBC1D25Q3MII6 688 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 GLT8D1Q68CQ7 371 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 TSSK4Q6SA08 328 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 SYT9Q86SS6 491 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 PHC2Q8IXK0 858 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 IL22RA1Q8N6P7 574 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 GDPD1Q8N9F7 314 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 SYT4Q9H2B2 425 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 KLF15Q9UIH9 416 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 KLHL21Q9UJP4 597 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 NOP16Q9Y3C1 178 aaKnown RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 A0A0A6YYD5 115 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 TRBV11-1A0A0K0K1C0 115 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 METTL15A6NJ78 407 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 NPIPA2E9PIF3 369 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 NPIPA3F8WFD2 350 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 F10P00742 488 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 FPR3P25089 353 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 ZXDCQ2QGD7 858 aaPredicted RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 WBP2NLQ6ICG8 309 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 FBXO42Q6P3S6 717 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 PDCD1LG2Q9BQ51 273 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 GABARAPL3Q9BY60 117 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 CHMP1AQ9HD42 196 aaPredicted RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 DIMT1Q9UNQ2 313 aaKnown RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 HS3ST3A1Q9Y663 406 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 SLC22A7Q9Y694 548 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 TDRD6O60522 2096 aaKnown RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 CACNA1GO43497 2377 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 UCHL1P09936 223 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 POU3F1Q03052 451 aaPredicted RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 VASNQ6EMK4 673 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 XAF1Q6GPH4 301 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 XKRXQ6PP77 449 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 OR6C1Q96RD1 312 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 SCN2AQ99250 2005 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 GPR55Q9Y2T6 319 aaPredicted RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 C13orf42A0A1B0GVH6 325 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 HTR3EA5X5Y0 456 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 ANKRD61A6NGH8 418 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 HCRTR1O43613 425 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 SOX18P35713 384 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 CTBP2P56545 445 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 P2RY14Q15391 338 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 C3orf38Q5JPI3 329 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 UBE2UQ5VVX9 321 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 KCTD9Q7L273 389 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 MARCH3Q86UD3 253 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 PLEKHA6Q9Y2H5 1048 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 ZNF337Q9Y3M9 751 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 CD27P26842 260 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 RACK1P63244 317 aaKnown RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 HSD11B2P80365 405 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 PLK5Q496M5 336 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 SLC6A19Q695T7 634 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 SLC18B1Q6NT16 456 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 PNLDC1Q8NA58 520 aaKnown RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 GABARAPL1Q9H0R8 117 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 ABI3Q9P2A4 366 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 FBXO9Q9UK97 447 aaPredicted RBP13.87□□□□□ -0.19
CUX1-214ENST00000550008 ASB4Q9Y574 426 aa13.87□□□□□ -0.19
CUX1-214ENST00000550008 ZNF749O43361 778 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 UTS2O95399 124 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 IL1AP01583 271 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 CSTBP04080 98 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 LSM11P83369 360 aaKnown RBP eCLIP13.86□□□□□ -0.196e-6■■■□□ 16.2
CUX1-214ENST00000550008 SRYQ05066 204 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TRAM1Q15629 374 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TMEM99Q8N816 258 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 GRPEL2Q8TAA5 225 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 FAM46BQ96A09 425 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 BMFQ96LC9 184 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 KLHL15Q96M94 604 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TSSK2Q96PF2 358 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 ALG12Q9BV10 488 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TRPV4Q9HBA0 871 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TLCD2A6NGC4 264 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 SCRG1O75711 98 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 ZNF43P17038 809 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 ITGA3P26006 1051 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 TSFMP43897 325 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 EIF2B1Q14232 305 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 DNAJC5GQ8N7S2 189 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 OR13C3Q8NGS6 347 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 SLC22A8Q8TCC7 542 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 FAM71F1Q96KD3 344 aaPredicted RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 INTS14Q96SY0 518 aa13.86□□□□□ -0.19
CUX1-214ENST00000550008 RBM24Q9BX46 236 aaKnown RBP13.86□□□□□ -0.19
CUX1-214ENST00000550008 CFHR5Q9BXR6 569 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms