RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 MED11Q9P086 117 aa11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 TCFL5Q9UL49 500 aa11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 PADI1Q9ULC6 663 aa11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 ADAM18Q9Y3Q7 739 aa11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 RPL36Q9Y3U8 105 aaKnown RBP11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 PCDHGA3Q9Y5H0 932 aa11.16□□□□□ -0.62
AP003559.1-201ENST00000540906 CCDC187A0A096LP49 1063 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 SPAARA0A1B0GVQ0 90 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TMEM72A0PK05 275 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 SHISA8B8ZZ34 492 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ZNF701M0R085 212 aaPredicted RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TRMUO75648 421 aaKnown RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 RCBTB2O95199 551 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 NUDT14O95848 222 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 FBXO45P0C2W1 286 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 OTX2P32243 289 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 PEX19P40855 299 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 SLC6A8P48029 635 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ETV1P50549 477 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 P2RX1P51575 399 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 CDH11P55287 796 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 LSM3P62310 102 aaKnown RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 LSAMPQ13449 338 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TRIP6Q15654 476 aaKnown RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ZNF74Q16587 644 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 CTF1Q16619 201 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 MEDAGQ5VYS4 303 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ARSKQ6UWY0 536 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 CYB561A3Q8NBI2 242 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 OR4F15Q8NGB8 312 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 OR52L1Q8NGH7 329 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ZNF420Q8TAQ5 688 aaPredicted RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 ZPLD1Q8TCW7 415 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 PTP4A1Q93096 173 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 KISS1RQ969F8 398 aaPredicted RBP11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TAAR8Q969N4 342 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 OTULINQ96BN8 352 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TMEM80Q96HE8 168 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 TMEM43Q9BTV4 400 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 SEC14L4Q9UDX3 406 aa11.15□□□□□ -0.62
AP003559.1-201ENST00000540906 CCDC182A6NF36 153 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ITGA10O75578 1167 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 PNMTP11086 282 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 BMP7P18075 431 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 AQP2P41181 271 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 TMBIM6P55061 237 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 RPS4XP62701 263 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 CBFBQ13951 182 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 CRMP1Q14194 572 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 TIGD6Q17RP2 521 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNF791Q3KP31 576 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 NIPAL3Q6P499 406 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 CXXC5Q7LFL8 322 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ADGRG3Q86Y34 549 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ANKRD13BQ86YJ7 626 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 LRRC75AQ8NAA5 344 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 NACC2Q96BF6 587 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 PTDSS2Q9BVG9 487 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 MMP25Q9NPA2 562 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 CHRNA9Q9UGM1 479 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 MRPS18BQ9Y676 258 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 RIF1Q5UIP0 2472 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 TERTO14746 1132 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 BGLAPP02818 100 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 HMGN1P05114 100 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 HIST1H1CP16403 213 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 PGCP20142 388 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 RPS5P46782 204 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 FOXK1P85037 733 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 IL10RAQ13651 578 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 NTRK2Q16620 822 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 SOWAHCQ53LP3 525 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ARMCX4Q5H9R4 360 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 STPG1Q5TH74 334 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNF468Q5VIY5 522 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 NUP54Q7Z3B4 507 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ZBTB46Q86UZ6 589 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 GHDCQ8N2G8 530 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 SMAP2Q8WU79 429 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNRF4Q8WWF5 429 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 SPACA9Q96E40 222 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 PLEKHA8Q96JA3 519 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 OPALINQ96PE5 141 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 MYCBPQ99417 103 aaPredicted RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 ZNF649Q9BS31 505 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 OR11A1Q9GZK7 315 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 FN3KQ9H479 309 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 CMC2Q9NRP2 79 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 MED17Q9NVC6 651 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 MRPS18AQ9NVS2 196 aaKnown RBP11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 TAS2R10Q9NYW0 307 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 IER3IP1Q9Y5U9 82 aa11.14□□□□□ -0.63
AP003559.1-201ENST00000540906 TMED7-TICAM2A0A0A6YYA0 188 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 NSG1A0A0A6YYJ2 146 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 A0A1W2PQ72 361 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 LRRTM2O43300 516 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 FOXD2O60548 495 aaPredicted RBP11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 GABARAPO95166 117 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 NDUFB2O95178 105 aa11.13□□□□□ -0.63
AP003559.1-201ENST00000540906 GYPBP06028 91 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms