RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GATAD2BQ8WXI9 593 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 WNT2BQ93097 391 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 BTBD2Q9BX70 525 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 BHLHE41Q9C0J9 482 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 TINAGL1Q9GZM7 467 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 OR51I1Q9H343 314 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 C12orf10Q9HB07 376 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 FOXJ2Q9P0K8 574 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 SRPK3Q9UPE1 567 aa8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 MRPS18BQ9Y676 258 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-209ENST00000509277 AKAP13Q12802 2813 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 A0A1W2PPL8 197 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 TRIM64A6NGJ6 449 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF98A6NK75 572 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 J3KTA2 159 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 TXNL1O43396 289 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CH25HO95992 272 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ALDOBP05062 364 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ZGLP1P0C6A0 271 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CBX5P45973 191 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PDX1P52945 283 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CLINT1Q14677 625 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ZBTB37Q5TC79 503 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 OR2G6Q5TZ20 316 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 SFRP4Q6FHJ7 346 aaPredicted RBP8□□□□□ -1.13
LIMCH1-209ENST00000509277 DLEU7Q6UYE1 221 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CA5BP1Q8WTZ4 195 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ELMOD3Q96FG2 381 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 COL21A1Q96P44 957 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 GAL3ST1Q99999 423 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 DUSP21Q9H596 190 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 DIABLOQ9NR28 239 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PFDN2Q9UHV9 154 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 MGAQ8IWI9 3026 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PCDH17O14917 1159 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 OR10H3O60404 316 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 SPDEFO95238 335 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 DHFRP00374 187 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF883P0CG24 379 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PNLIPP16233 465 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 NAGAP17050 411 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 GABRA3P34903 492 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 RYKP34925 604 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 TALDO1P37837 337 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CCR4P51679 360 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PRR5P85299 388 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 LHFPL3Q86UP9 236 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 MSRB3Q8IXL7 192 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ZZZ3Q8IYH5 903 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 IZUMO1Q8IYV9 350 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 HORMAD2Q8N7B1 307 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 OR5P2Q8WZ92 322 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 FBXO17Q96EF6 278 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 HYLS1Q96M11 299 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 DCBLD2Q96PD2 775 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 ANKRD10Q9NXR5 420 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 PADI1Q9ULC6 663 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 MAB21L2Q9Y586 359 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 FER1L5A0AVI2 2057 aa8□□□□□ -1.13
LIMCH1-209ENST00000509277 CD8B2A6NJW9 211 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CLCA1A8K7I4 914 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 IFNA14P01570 189 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CD3GP09693 182 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CD8BP10966 210 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 PRPH2P23942 346 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 DNAJA1P31689 397 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CDC42P60953 191 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 RRAS2P62070 204 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CHAF1BQ13112 559 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 FAM53BQ14153 422 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SYPL1Q16563 259 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CDC73Q6P1J9 531 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 IKBIPQ70UQ0 350 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 LNX2Q8N448 690 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 TCEANCQ8N8B7 351 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 COX18Q8N8Q8 333 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC16A11Q8NCK7 471 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 OR8J2Q8NGG1 315 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 DNAJA4Q8WW22 397 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 C3orf49Q96BT1 292 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 UPRTQ96BW1 309 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SDHCQ99643 169 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 VN1R1Q9GZP7 353 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GHITMQ9H3K2 345 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC22A11Q9NSA0 550 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ENOPH1Q9UHY7 261 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ADAM29Q9UKF5 820 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 KCNE3Q9Y6H6 103 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 KMT2EQ8IZD2 1858 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 LOC400499M0QZD8 3231 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ANKRD11Q6UB99 2663 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CLDN24A6NM45 220 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 NTN3O00634 580 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ARPC5O15511 151 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GMDSO60547 372 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 PTPN6P29350 595 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GABRA4P48169 554 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 LARS2Q15031 903 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CLEC12AQ5QGZ9 265 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms