RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CLNS1AP54105 237 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 SNRPD2P62316 118 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 RPS26P62854 115 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 PHC1P78364 1004 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 C11orf71Q6IPW1 123 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 FAM166AQ6J272 317 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 RIMKLAQ8IXN7 391 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 POMGNT2Q8NAT1 580 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 OR8J2Q8NGG1 315 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 ROPN1LQ96C74 230 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 CCDC106Q9BWC9 280 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 OBP2BQ9NPH6 170 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 CTPS2Q9NRF8 586 aa18.5■□□□□ 0.55
SQSTM1-210ENST00000506042 ABCA1O95477 2261 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 ZNF716A6NP11 495 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 ZNF208O43345 1280 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 FCMRO60667 390 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 PGM1P36871 562 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 KCNJ10P78508 379 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 LSM11P83369 360 aaKnown RBP eCLIP18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 LRRC74AQ0VAA2 488 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 GABRA6Q16445 453 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 GSPT2Q8IYD1 628 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 ZNF525Q8N782 197 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 GIMAP2Q9UG22 337 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 COL6A5A8TX70 2615 aa18.49■□□□□ 0.55
SQSTM1-210ENST00000506042 PRSS51A0A1B0GVH4 220 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 OR6C65A6NJZ3 312 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 LMX1BO60663 402 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 MYZAPP0CAP1 466 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 OR12D1P0DN82 309 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 SRD5A1P18405 259 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 OR4F3Q6IEY1 312 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 ZNF440Q8IYI8 595 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 FAM71CQ8NEG0 241 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 MECRQ9BV79 373 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 PIF1Q9H611 641 aa18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 MARCOQ9UEW3 520 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-210ENST00000506042 GPRIN2O60269 458 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 GPIP06744 558 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 PTNP21246 168 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 MPGP29372 298 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 IDH2P48735 452 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 LIPNQ5VXI9 398 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 ZCCHC23Q6ZST2 131 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 TCP10LQ8TDR4 215 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 C10orf105Q8TEF2 133 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 ROPN1BQ9BZX4 212 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 MANSC1Q9H8J5 431 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 ROPN1Q9HAT0 212 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 SLC17A5Q9NRA2 495 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 ATRQ13535 2644 aa18.47■□□□□ 0.55
SQSTM1-210ENST00000506042 TMED7-TICAM2A0A0A6YYA0 188 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 HAX1O00165 279 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 CPSF4O95639 269 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 CRYAAP02489 173 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 IL7RP16871 459 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 UBE2NP61088 152 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 SQLEQ14534 574 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 TYW3Q6IPR3 259 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 TNFAIP8L2Q6P589 184 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 PAQR6Q6TCH4 344 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 NUDCD3Q8IVD9 361 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 LRRC34Q8IZ02 419 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 CLECL1Q8IZS7 167 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 TESCQ96BS2 214 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 C3orf30Q96M34 536 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 ZNF317Q96PQ6 595 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 SF3B5Q9BWJ5 86 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 TAPBPLQ9BX59 468 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 SAP130Q9H0E3 1048 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 ARMC7Q9H6L4 198 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 ZDHHC2Q9UIJ5 367 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 TMED7Q9Y3B3 224 aa18.46■□□□□ 0.55
SQSTM1-210ENST00000506042 A0A1W2PR80 420 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 CCNA2P20248 432 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 CXCR1P25024 350 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 COPZ1P61923 177 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 GSTA3Q16772 222 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 ZSWIM7Q19AV6 140 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 EMBQ6PCB8 327 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 SLC46A3Q7Z3Q1 461 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 NEURL3Q96EH8 262 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 ARL5BQ96KC2 179 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 TRNT1Q96Q11 434 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 SLC35A5Q9BS91 424 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 C1QTNF6Q9BXI9 259 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 TMEM45AQ9NWC5 275 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 SLC17A7Q9P2U7 560 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 FLVCR1Q9Y5Y0 555 aa18.45■□□□□ 0.54
SQSTM1-210ENST00000506042 SONP18583 2426 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 PRR14LQ5THK1 2151 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 LOC390937A0A1W2PQ73 354 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 FAAHO00519 579 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 SPAG7O75391 227 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 VAMP5O95183 116 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 BPGMP07738 259 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 ITGA5P08648 1049 aa18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 APEHP13798 732 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-210ENST00000506042 ZNF16P17020 682 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms