RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KLHDC3Q9BQ90 382 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 TMEM43Q9BTV4 400 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 TEX12Q9BXU0 123 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 UBQLN3Q9H347 655 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 HHATLQ9HCP6 504 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 SSUH2Q9Y2M2 353 aa12.92□□□□□ -0.34
CUX1-209ENST00000487284 IGKV1D-42A0A075B6H8 117 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 CCDC160A6NGH7 325 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 ELOA3DA6NLF2 546 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 ZNF99A8MXY4 864 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 ZNF701M0R085 212 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 SURF4O15260 269 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 TLX2O43763 284 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 SCO2O43819 266 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 PTP4A3O75365 173 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 SAGP10523 405 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 GRK5P34947 590 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 SLC1A3P43003 542 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 MAP2K4P45985 399 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 TMED10P49755 219 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 ST13P50502 369 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 P2RX1P51575 399 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 FBXW4P57775 412 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 CRYZQ08257 329 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 AIMP2Q13155 320 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 FHL1Q13642 323 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 TBCEQ15813 527 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 ELOA3BQ3SY89 546 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 B3GNTL1Q67FW5 361 aaPredicted RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 SMARCD3Q6STE5 483 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 NUP54Q7Z3B4 507 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 RPS19BP1Q86WX3 136 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 SLC15A4Q8N697 577 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 CLEC1AQ8NC01 280 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 ELOA3Q8NG57 546 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 OR52L1Q8NGH7 329 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 OR5W2Q8NH69 310 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 ZNF524Q96C55 264 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 DCBLD2Q96PD2 775 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 ADAM19Q9H013 955 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 CDCP1Q9H5V8 836 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 ACOT13Q9NPJ3 140 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 RSL24D1Q9UHA3 163 aaKnown RBP12.91□□□□□ -0.34
CUX1-209ENST00000487284 POLHQ9Y253 713 aa12.91□□□□□ -0.34
CUX1-209ENST00000487284 C17orf51A8MQB3 221 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 C1QTNF9BB2RNN3 333 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 KDM4EB2RXH2 506 aaPredicted RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 BHLHE40O14503 412 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 GNB5O14775 395 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 CDC40O60508 579 aaKnown RBP eCLIP12.9□□□□□ -0.34
CUX1-209ENST00000487284 ITGA10O75578 1167 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 INMTO95050 263 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 FADS2O95864 444 aaKnown RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 HMGN1P05114 100 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 STSP08842 583 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 FBXO45P0C2W1 286 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 C1QTNF9P0C862 333 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 BMP7P18075 431 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 PGCP20142 388 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ITGA3P26006 1051 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ACVR2AP27037 513 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 DCKP27707 260 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 SLC9A3P48764 834 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 GP2P55259 537 aaKnown RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 ZNF91Q05481 1191 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ST3GAL4Q11206 333 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 IRF3Q14653 427 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 SYT6Q5T7P8 510 aaPredicted RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 H3F3CQ6NXT2 135 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 CLVS1Q8IUQ0 354 aaPredicted RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 CYP4Z2PQ8N1L4 340 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ARMC10Q8N2F6 343 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 LNX2Q8N448 690 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ZNF420Q8TAQ5 688 aaPredicted RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 FCGR1BQ92637 280 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 RORBQ92753 470 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 TMCO6Q96DC7 493 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 SGTBQ96EQ0 304 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 ZNF582Q96NG8 517 aaPredicted RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 RASL10BQ96S79 203 aa12.9□□□□□ -0.34
CUX1-209ENST00000487284 RPL36Q9Y3U8 105 aaKnown RBP12.9□□□□□ -0.34
CUX1-209ENST00000487284 DBTP11182 482 aaKnown RBP12.9□□□□□ -0.35
CUX1-209ENST00000487284 C21orf33P30042 268 aaPredicted RBP12.9□□□□□ -0.35
CUX1-209ENST00000487284 GAS1P54826 345 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 RRADP55042 308 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 MLF1P58340 268 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 CBFBQ13951 182 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 TMEM44Q2T9K0 475 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 UBE2UQ5VVX9 321 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 JMJD6Q6NYC1 403 aaPredicted RBP12.9□□□□□ -0.35
CUX1-209ENST00000487284 THSD4Q6ZMP0 1018 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 SLC46A3Q7Z3Q1 461 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 OAFQ86UD1 273 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 GALNT16Q8N428 558 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 STX19Q8N4C7 294 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 B4GALNT2Q8NHY0 566 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 ZNF563Q8TA94 476 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 ISOC1Q96CN7 298 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 LRR1Q96L50 414 aa12.9□□□□□ -0.35
CUX1-209ENST00000487284 DOK1Q99704 481 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms