RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SLX4IP	Q5VYV7	408 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	TIGD3	Q6B0B8	471 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	LAIR2	Q6ISS4	152 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	ZNF620	Q6ZNG0	422 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	SLC46A3	Q7Z3Q1	461 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	C10orf53	Q8N6V4	93 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	OR5M1	Q8NGP8	315 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	POC1B	Q8TC44	478 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	OSTF1	Q92882	214 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	TAAR8	Q969N4	342 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	C1GALT1C1	Q96EU7	318 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	TMEM41A	Q96HV5	264 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	OR52D1	Q9H346	318 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	TIMMDC1	Q9NPL8	285 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	ZNF226	Q9NYT6	803 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	SIGLEC7	Q9Y286	467 aa		10.16	□□□□□ -0.78
APTX-223	ENST00000479656	EFNA2	O43921	213 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	CBR3	O75828	277 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	OR7A10	O76100	309 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	BMP7	P18075	431 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	IL11	P20809	199 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	DLX5	P56178	289 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	NUP107	P57740	925 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	CDC42	P60953	191 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	FHL1	Q13642	323 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	MAD2L1BP	Q15013	274 aa	Predicted RBP	10.15	□□□□□ -0.78
APTX-223	ENST00000479656	ZBED5	Q49AG3	693 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	SLC25A53	Q5H9E4	307 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	C12orf73	Q69YU5	71 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	SLC27A4	Q6P1M0	643 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	DEPDC4	Q8N2C3	294 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	CLDN22	Q8N7P3	220 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	ATP6V1C2	Q8NEY4	427 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	FDCSP	Q8NFU4	85 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	RHOXF1	Q8NHV9	184 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	FBLIM1	Q8WUP2	373 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	SLC39A7	Q92504	469 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	MRGPRX4	Q96LA9	322 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	MOGAT1	Q96PD6	335 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	HES7	Q9BYE0	225 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	OR11A1	Q9GZK7	315 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	ADNP	Q9H2P0	1102 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	TBC1D23	Q9NUY8	699 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	TVP23B	Q9NYZ1	205 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	MYRF	Q9Y2G1	1151 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	PCDHGB6	Q9Y5F9	930 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	CDH10	Q9Y6N8	788 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	CELSR3	Q9NYQ7	3312 aa		10.15	□□□□□ -0.78
APTX-223	ENST00000479656	PINLYP	A6NC86	204 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656		A8MVM7	634 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	FAM47E-STBD1	D6RA91	191 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	ETV2	O00321	342 aa	Predicted RBP	10.15	□□□□□ -0.79
APTX-223	ENST00000479656	HCN1	O60741	890 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	RCBTB2	O95199	551 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	TNFAIP8	O95379	198 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	DPP4	P27487	766 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	FMO3	P31513	532 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	SMS	P52788	366 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	DSCR4	P56555	118 aa	Predicted RBP	10.15	□□□□□ -0.79
APTX-223	ENST00000479656	ZNF74	Q16587	644 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	BROX	Q5VW32	411 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	SMARCD3	Q6STE5	483 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	CASP12	Q6UXS9	341 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	THSD4	Q6ZMP0	1018 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	PTCHD4	Q6ZW05	846 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	OR4Q3	Q8NH05	313 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	FANK1	Q8TC84	345 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	APH1B	Q8WW43	257 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	IL4I1	Q96RQ9	567 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	SLC25A19	Q9HC21	320 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	MCCC2	Q9HCC0	563 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	KLHL1	Q9NR64	748 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	IMPAD1	Q9NX62	359 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	TUBA8	Q9NY65	449 aa	Predicted RBP	10.15	□□□□□ -0.79
APTX-223	ENST00000479656	CHRNA9	Q9UGM1	479 aa		10.15	□□□□□ -0.79
APTX-223	ENST00000479656	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.15	□□□□□ -0.79
APTX-223	ENST00000479656	TRAV36DV7	A0A075B6V5	113 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	HTR3E	A5X5Y0	456 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	OR5H15	A6NDH6	313 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	ZIC3	O60481	467 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	NPIPB7	O75200	414 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	WBP4	O75554	376 aa	Known RBP	10.14	□□□□□ -0.79
APTX-223	ENST00000479656	IGF2	P01344	180 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	OPN1LW	P04000	364 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	GABRB1	P18505	474 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	HK1	P19367	917 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	MFAP5	Q13361	173 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	TOMM20	Q15388	145 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	SMN1	Q16637	294 aa	Known RBP	10.14	□□□□□ -0.79
APTX-223	ENST00000479656	GXYLT1	Q4G148	440 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	C1orf140	Q5VVS0	124 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	CCDC103	Q8IW40	242 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	SULF2	Q8IWU5	870 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	TCEANC	Q8N8B7	351 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	BPIFB6	Q8NFQ5	453 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	STK35	Q8TDR2	534 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	SLC25A36	Q96CQ1	311 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	PTDSS2	Q9BVG9	487 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	UBQLN3	Q9H347	655 aa		10.14	□□□□□ -0.79
APTX-223	ENST00000479656	NANS	Q9NR45	359 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms