RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 NAA11Q9BSU3 229 aaPredicted RBP17.6■□□□□ 0.41
SHROOM1-204ENST00000440118 INTS9Q9NV88 658 aaKnown RBP17.6■□□□□ 0.41
SHROOM1-204ENST00000440118 CCDC167Q9P0B6 97 aa17.6■□□□□ 0.41
SHROOM1-204ENST00000440118 OSGIN1Q9UJX0 560 aa17.6■□□□□ 0.41
SHROOM1-204ENST00000440118 ING1Q9UK53 422 aaPredicted RBP17.6■□□□□ 0.41
SHROOM1-204ENST00000440118 DSPPQ9NZW4 1301 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 CDHR4A6H8M9 788 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 ZNF814B7Z6K7 855 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 CLIC1O00299 241 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 ZNF208O43345 1280 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 IGHV3-9P01782 118 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 CD3EP07766 207 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 TFPTP0C1Z6 253 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 LOXP28300 417 aaPredicted RBP17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 MVDP53602 400 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 FADDQ13158 208 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 TAB1Q15750 504 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 ZSWIM7Q19AV6 140 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 TMEM171Q8WVE6 324 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 GTF2H4Q92759 462 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 MUCL1Q96DR8 90 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 EBF4Q9BQW3 602 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 CCDC28BQ9BUN5 200 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 RNF115Q9Y4L5 304 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 PCDHB14Q9Y5E9 798 aa17.59■□□□□ 0.41
SHROOM1-204ENST00000440118 A0A096LPI6 279 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 A0A0G2JPF8 293 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 HNRNPCL2B2RXH8 293 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 HNRNPCL3B7ZW38 293 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 FAAHO00519 579 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 EIF1BO60739 113 aaKnown RBP17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 HNRNPCL1O60812 293 aaKnown RBP17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 MRPL33O75394 65 aaKnown RBP17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 THBS1P07996 1170 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 HNRNPCL4P0DMR1 293 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 GGT1P19440 569 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 IDUAP35475 653 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 MAP2K6P52564 334 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 PDK3Q15120 406 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 RNF220Q5VTB9 566 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 WBP2NLQ6ICG8 309 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 CASP12Q6UXS9 341 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 LRRC75A-AS1Q8N1F1 130 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 SPDL1Q96EA4 605 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 CXorf56Q9H5V9 222 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 TRAPPC4Q9Y296 219 aa17.58■□□□□ 0.4
SHROOM1-204ENST00000440118 NF1P21359 2839 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 IGKV3D-15A0A087WSY6 115 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 CIB4A0PJX0 185 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 CCT8L1PA6NM43 557 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 HS3ST1O14792 307 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 ATP8B1O43520 1251 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 CNOT4O95628 575 aaKnown RBP17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 PLAUP00749 431 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 FOSL1P15407 271 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 ADSLP30566 484 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 HOXC12P31275 282 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 PPA1Q15181 289 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 RGNQ15493 299 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 MAPK11Q15759 364 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 ZNF311Q5JNZ3 666 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 CCDC103Q8IW40 242 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 BBS10Q8TAM1 723 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 AKAP1Q92667 903 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 TAPBPLQ9BX59 468 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 PAIP1Q9H074 479 aaKnown RBP17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 SLC9A8Q9Y2E8 581 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 IFT52Q9Y366 437 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 ZFHX3Q15911 3703 aa17.57■□□□□ 0.4
SHROOM1-204ENST00000440118 ZNF716A6NP11 495 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 RAD51DO75771 328 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 GPIP06744 558 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 NUDT7P0C024 238 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 PPIBP23284 216 aaKnown RBP17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 SQLEQ14534 574 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 OR7A5Q15622 319 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 AGKQ53H12 422 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 GCNT6Q5T4J0 391 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 FBXW9Q5XUX1 488 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 SSX8Q7RTT4 187 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 MAL2Q969L2 176 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 SPATA9Q9BWV2 254 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 A4GALTQ9NPC4 353 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 ASB6Q9NWX5 421 aa17.56■□□□□ 0.4
SHROOM1-204ENST00000440118 ZNF469Q96JG9 3925 aaPredicted RBP17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 ZC3H12DA2A288 527 aaKnown RBP17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 COX5AP20674 150 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 IGHV1-2P23083 117 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 EDNRAP25101 427 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 MRPL19P49406 292 aaKnown RBP17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 SLC16A1P53985 500 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 BSPH1Q075Z2 132 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 OTUD3Q5T2D3 398 aaPredicted RBP17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 PRAMEF8Q5VWM4 474 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 PRAMEF7Q5VXH5 474 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 BLOC1S3Q6QNY0 202 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 YTHDF3Q7Z739 585 aaKnown RBP17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 SERPINA11Q86U17 422 aa17.55■□□□□ 0.4
SHROOM1-204ENST00000440118 KRT73Q86Y46 540 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms