RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RRM2P31350 389 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 YAP1P46937 504 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 MASP1P48740 699 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CDH12P55289 794 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SUMO3P55854 103 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SMIM11AP58511 58 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 COPZ1P61923 177 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 PLAURQ03405 335 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF117Q03924 483 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SLC34A1Q06495 639 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SNTA1Q13424 505 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 GANABQ14697 944 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SLC10A1Q14973 349 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 TRIP10Q15642 601 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 NPTX1Q15818 432 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SLC25A35Q3KQZ1 300 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 FGD3Q5JSP0 725 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 BICRALQ6AI39 1079 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SLC30A6Q6NXT4 461 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 TMEM81Q6P7N7 255 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 AMIGO2Q86SJ2 522 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 OFCC1Q8IZS5 231 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 RELL2Q8NC24 303 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 TOR1AIP2Q8NFQ8 470 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 OR4D11Q8NGI4 311 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 PAQR8Q8TEZ7 354 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 RNF138Q8WVD3 245 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CENPNQ96H22 339 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF597Q96LX8 424 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 FNDC11Q9BVV2 318 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 POLDIP3Q9BY77 421 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 LAT2Q9GZY6 243 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SEMA6AQ9H2E6 1030 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 VCX3BQ9H321 246 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF703Q9H7S9 590 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 GALNT9Q9HCQ5 603 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 DLL4Q9NR61 685 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CTPS2Q9NRF8 586 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SELENONQ9NZV5 590 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CNIH4Q9P003 139 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 ACAD8Q9UKU7 415 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CARD8Q9Y2G2 431 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 SAMHD1Q9Y3Z3 626 aaKnown RBP10.97□□□□□ -0.65
PTPRF-208ENST00000437607 CHST2Q9Y4C5 530 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 PCNX3Q9H6A9 2034 aa10.97□□□□□ -0.65
PTPRF-208ENST00000437607 TRGV5A0A0B4J1U4 118 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 LRRC3CA6NJW4 275 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 SAC3D1A6NKF1 404 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 J3KTA2 159 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 HCN1O60741 890 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 OR5F1O95221 314 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 H1F0P07305 194 aaKnown RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 PGCP20142 388 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 FPR1P21462 350 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 RYKP34925 604 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 CASP3P42574 277 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 P2RX1P51575 399 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF136P52737 540 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 HOXC5Q00444 222 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 C17orf67Q0P5P2 114 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 EPS8Q12929 822 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 FOXD4Q12950 439 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 CBFBQ13951 182 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 GK3PQ14409 553 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 ENTPD8Q5MY95 495 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 WLSQ5T9L3 541 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 RIPPLY2Q5TAB7 128 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 SLC22A10Q63ZE4 541 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 HMBOX1Q6NT76 420 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 APOOLQ6UXV4 268 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 RBM45Q8IUH3 476 aaKnown RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 LILRA2Q8N149 483 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 CADM2Q8N3J6 435 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 NAXEQ8NCW5 288 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 PIK3C3Q8NEB9 887 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 OR4K17Q8NGC6 315 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 B4GALNT2Q8NHY0 566 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 ZNF563Q8TA94 476 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 SARAFQ96BY9 339 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 DTNBP1Q96EV8 351 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 RSPO3Q9BXY4 272 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 TRIM2Q9C040 744 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 VCXQ9H320 206 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 GSX1Q9H4S2 264 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 LDAHQ9H6V9 325 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 TMEM27Q9HBJ8 222 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 RASSF1Q9NS23 344 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 CRIM1Q9NZV1 1036 aa10.96□□□□□ -0.65
PTPRF-208ENST00000437607 NKX1-2Q9UD57 310 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 CNOT11Q9UKZ1 510 aaKnown RBP10.96□□□□□ -0.65
PTPRF-208ENST00000437607 ANK3Q12955 4377 aaKnown RBP10.96□□□□□ -0.66
PTPRF-208ENST00000437607 TRAPPC13A5PLN9 417 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 TNFRSF11BO00300 401 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 OIP5O43482 229 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 GMFGO60234 142 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 GADD45GO95257 159 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 LINGO3P0C6S8 592 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 PRG2P13727 222 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 PEX2P28328 305 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 KIR2DL3P43628 341 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms