RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 THBS2P35442 1172 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 SOAT1P35610 550 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 GZMKP49863 264 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 GGTLC2Q14390 218 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 PCLAFQ15004 111 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 ZNF141Q15928 474 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 UGT3A2Q3SY77 523 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 OR7E24Q6IFN5 339 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 CCDC103Q8IW40 242 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 OR52E4Q8NGH9 312 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 AGR3Q8TD06 166 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 SLC25A43Q8WUT9 341 aaPredicted RBP17.02■□□□□ 0.32
CLN3-262ENST00000637699 MOAP1Q96BY2 351 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 COQ8BQ96D53 544 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 ARL5BQ96KC2 179 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 PPP3R2Q96LZ3 170 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 C1orf50Q9BV19 199 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 FKRPQ9H9S5 495 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 CTPS2Q9NRF8 586 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 KCNS2Q9ULS6 477 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 SLC35F4A4IF30 521 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 GPR171O14626 319 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 TRIM13O60858 407 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 STX11O75558 287 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 UGT2B17O75795 530 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 FGF4P08620 206 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 ITGA5P08648 1049 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 KRT4P19013 534 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 MATN1P21941 496 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 APOBEC3AP31941 199 aaPredicted RBP17.01■□□□□ 0.31
CLN3-262ENST00000637699 HBA1P69905 142 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 FAM120AOSQ5T036 256 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 FAM166AQ6J272 317 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 EIF3MQ7L2H7 374 aaKnown RBP17.01■□□□□ 0.31
CLN3-262ENST00000637699 C4orf33Q8N1A6 199 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 CLEC4FQ8N1N0 589 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 NATD1Q8N6N6 113 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 WDR31Q8NA23 367 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 EPS8L3Q8TE67 593 aaKnown RBP17.01■□□□□ 0.31
CLN3-262ENST00000637699 PRPF18Q99633 342 aaKnown RBP17.01■□□□□ 0.31
CLN3-262ENST00000637699 SERHL2Q9H4I8 314 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 MALT1Q9UDY8 824 aa17.01■□□□□ 0.31
CLN3-262ENST00000637699 SPIN1Q9Y657 262 aaPredicted RBP17.01■□□□□ 0.31
CLN3-262ENST00000637699 LOC100289279A0A1B0GTE1 492 aa17■□□□□ 0.31
CLN3-262ENST00000637699 SLU7O95391 586 aaKnown RBP17■□□□□ 0.31
CLN3-262ENST00000637699 RYKP34925 604 aa17■□□□□ 0.31
CLN3-262ENST00000637699 APOBEC1P41238 236 aaKnown RBP17■□□□□ 0.31
CLN3-262ENST00000637699 IL23RQ5VWK5 629 aa17■□□□□ 0.31
CLN3-262ENST00000637699 BHLHB9Q6PI77 547 aa17■□□□□ 0.31
CLN3-262ENST00000637699 C6orf120Q7Z4R8 191 aa17■□□□□ 0.31
CLN3-262ENST00000637699 ZNF563Q8TA94 476 aa17■□□□□ 0.31
CLN3-262ENST00000637699 PIGXQ8TBF5 258 aa17■□□□□ 0.31
CLN3-262ENST00000637699 C3orf49Q96BT1 292 aa17■□□□□ 0.31
CLN3-262ENST00000637699 FBXO17Q96EF6 278 aa17■□□□□ 0.31
CLN3-262ENST00000637699 CCDC106Q9BWC9 280 aa17■□□□□ 0.31
CLN3-262ENST00000637699 OR11A1Q9GZK7 315 aa17■□□□□ 0.31
CLN3-262ENST00000637699 CHRNA9Q9UGM1 479 aa17■□□□□ 0.31
CLN3-262ENST00000637699 MID2Q9UJV3 735 aa17■□□□□ 0.31
CLN3-262ENST00000637699 DUXAA6NLW8 204 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 LYPLA1O75608 230 aaPredicted RBP16.99■□□□□ 0.31
CLN3-262ENST00000637699 PMS2P2O95744 297 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 CCNA2P20248 432 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 PDLIM4P50479 330 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 OR2B6P58173 313 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 PHC1P78364 1004 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 SLC25A3Q00325 362 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 MAPK14Q16539 360 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 ARHGAP11BQ3KRB8 267 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 ATP6AP1LQ52LC2 224 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 C6orf136Q5SQH8 315 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 CASP12Q6UXS9 341 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 C16orf62Q7Z3J2 963 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 LSRQ86X29 649 aaPredicted RBP16.99■□□□□ 0.31
CLN3-262ENST00000637699 FNDC5Q8NAU1 212 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.99■□□□□ 0.315e-8■■■■■ 65.3
CLN3-262ENST00000637699 MSI2Q96DH6 328 aaKnown RBP16.99■□□□□ 0.31
CLN3-262ENST00000637699 C3orf30Q96M34 536 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 DUSP26Q9BV47 211 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 PRR14Q9BWN1 585 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 BHLHE41Q9C0J9 482 aaPredicted RBP16.99■□□□□ 0.31
CLN3-262ENST00000637699 SLC17A5Q9NRA2 495 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 UPB1Q9UBR1 384 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 HDGFL3Q9Y3E1 203 aa16.99■□□□□ 0.31
CLN3-262ENST00000637699 ARFGEF3Q5TH69 2177 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 VWC2LB2RUY7 222 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 ATP6V1G2-DDX39BF2Z307 99 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 BCAS1O75363 584 aaPredicted RBP16.98■□□□□ 0.31
CLN3-262ENST00000637699 AK1P00568 194 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 PRPS1L1P21108 318 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 PGM1P36871 562 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 NR4A2P43354 598 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 MAGEA8P43361 318 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 SLC16A1P53985 500 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 CARTPTQ16568 116 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 PGS1Q32NB8 556 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 XKR7Q5GH72 579 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 PIMREGQ9BSJ6 248 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 EML4Q9HC35 981 aaKnown RBP16.98■□□□□ 0.31
CLN3-262ENST00000637699 SLC7A10Q9NS82 523 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 MOKQ9UQ07 419 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms