RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TIMM23BQ5SRD1 257 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 FBXW9Q5XUX1 488 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ABLIM2Q6H8Q1 611 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 OGFOD2Q6N063 350 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 GRINAQ7Z429 371 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 HMGN2P46Q86SG4 172 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 P2RY8Q86VZ1 359 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CCDC103Q8IW40 242 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 KIRREL3Q8IZU9 778 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ARFGAP2Q8N6H7 521 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ZNF433Q8N7K0 673 aaPredicted RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 KBTBD8Q8NFY9 601 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CNOT9Q92600 299 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 ZBTB9Q96C00 473 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 MUCL1Q96DR8 90 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 TRMT61AQ96FX7 289 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 CCDC115Q96NT0 180 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 TRNT1Q96Q11 434 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 TRIM2Q9C040 744 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 OR11A1Q9GZK7 315 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CENPHQ9H3R5 247 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 MTHFD2LQ9H903 347 aaPredicted RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 KCNK9Q9NPC2 374 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 EXOSC3Q9NQT5 275 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 CISD1Q9NZ45 108 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 EMC3Q9P0I2 261 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 MARCOQ9UEW3 520 aaPredicted RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 CHRNA9Q9UGM1 479 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 LIPT1Q9Y234 373 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 TRAPPC4Q9Y296 219 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 NOSIPQ9Y314 301 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 HDGFL3Q9Y3E1 203 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 MAGED1Q9Y5V3 778 aaPredicted RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 FN1P02751 2386 aaKnown RBP6.72□□□□□ -1.33
CUX1-219ENST00000606749 GOLGA8QA0A0J9YX86 632 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 A0A1W2PP18 115 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 GOLGA8OA6NCC3 632 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 AGAP5A6NIR3 686 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 OR5H1A6NKK0 313 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SHISA9B4DS77 424 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 GOLGA8NF8WBI6 632 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SDHDO14521 159 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 IGHV3-9P01782 118 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 PGRP06401 933 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CHRM4P08173 479 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CCNA2P20248 432 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 IDUAP35475 653 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CDKN1AP38936 164 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CDKN2CP42773 168 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 HTR3AP46098 478 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 KHKP50053 298 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SLC16A1P53985 500 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 OR2B6P58173 313 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 TXNL4AP83876 142 aaKnown RBP6.72□□□□□ -1.33
CUX1-219ENST00000606749 KRTAP1-1Q07627 177 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 BST1Q10588 318 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 FAPQ12884 760 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 ETFDHQ16134 617 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CEP85LQ5SZL2 805 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 ZNF621Q6ZSS3 439 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SSX8Q7RTT4 187 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SPATA19Q7Z5L4 167 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 RNF130Q86XS8 419 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 CMIPQ8IY22 773 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 UBE2J2Q8N2K1 259 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 ANKFN1Q8N957 763 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 PMM1Q92871 262 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 GTPBP3Q969Y2 492 aaKnown RBP6.72□□□□□ -1.33
CUX1-219ENST00000606749 APH1AQ96BI3 265 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 ZHX1-C8orf76Q96EF9 292 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 DNAJA3Q96EY1 480 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 MUS81Q96NY9 551 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 OR52E6Q96RD3 313 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 PANX1Q96RD7 426 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 PAIP2Q9BPZ3 127 aaKnown RBP6.72□□□□□ -1.33
CUX1-219ENST00000606749 INPP5KQ9BT40 448 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 REG4Q9BYZ8 158 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 GRIP2Q9C0E4 1043 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SLC38A1Q9H2H9 487 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 AIG1Q9NVV5 245 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 NPAP1Q9NZP6 1156 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 TMEM181Q9P2C4 612 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 OSGIN1Q9UJX0 560 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 RAB21Q9UL25 225 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 GPR45Q9Y5Y3 372 aa6.72□□□□□ -1.33
CUX1-219ENST00000606749 SPIN1Q9Y657 262 aaPredicted RBP6.72□□□□□ -1.33
CUX1-219ENST00000606749 TMED7-TICAM2A0A0A6YYA0 188 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 CIB4A0PJX0 185 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 TMEM72A0PK05 275 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 CCT8L1PA6NM43 557 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 KIAA1324LA8MWY0 1029 aaPredicted RBP6.71□□□□□ -1.34
CUX1-219ENST00000606749 RNF223E7ERA6 249 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 AP3D1O14617 1153 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 GPR171O14626 319 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 ABCD4O14678 606 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 ZNF208O43345 1280 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 DNPH1O43598 174 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 EIF1BO60739 113 aaKnown RBP6.71□□□□□ -1.34
CUX1-219ENST00000606749 NDUFS7O75251 213 aa6.71□□□□□ -1.34
CUX1-219ENST00000606749 MRPL33O75394 65 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms