RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 C16orf47Q6ZP98 133 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 RTL4Q6ZR62 310 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 GID4Q8IVV7 300 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 GHDCQ8N2G8 530 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 OR4C6Q8NH72 309 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 SGTBQ96EQ0 304 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 ERMAPQ96PL5 475 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 SYNDIG1Q9H7V2 258 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 MKKSQ9NPJ1 570 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 FAIMQ9NVQ4 179 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 C4orf47A7E2U8 309 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 PATE3B3GLJ2 98 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 SCDO00767 359 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 PFDN1O60925 122 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 CDRT1O95170 752 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 OCM2P0CE71 109 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 OCMP0CE72 109 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 HIST1H1CP16403 213 aaKnown RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 CELP19835 753 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 SLC2A5P22732 501 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 GPR143P51810 404 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 PPP5CP53041 499 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 RPS7P62081 194 aaKnown RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.24□□□□□ -0.29
VRK3-217ENST00000599538 CRTC2Q53ET0 693 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 ZNF322Q6U7Q0 402 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 KLBQ86Z14 1044 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 MAML2Q8IZL2 1156 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 PARP16Q8N5Y8 322 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 SDR9C7Q8NEX9 313 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 OR4K13Q8NH42 304 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 UFD1Q92890 307 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 OR6C1Q96RD1 312 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 NUAK2Q9H093 628 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 RHBDL2Q9NX52 303 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 CHRNA9Q9UGM1 479 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 CAB39Q9Y376 341 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 IER3IP1Q9Y5U9 82 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 SIRT4Q9Y6E7 314 aaPredicted RBP13.24□□□□□ -0.29
VRK3-217ENST00000599538 DYRK3O43781 588 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 GDF9O60383 454 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 PAICSP22234 425 aaKnown RBP13.23□□□□□ -0.29
VRK3-217ENST00000599538 HOXA6P31267 233 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 SOX6P35712 828 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 ADH7P40394 386 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 ZSWIM7Q19AV6 140 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 KLHL36Q8N4N3 616 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 ACBD7Q8N6N7 88 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 PSD4Q8NDX1 1056 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 FAM83FQ8NEG4 500 aaPredicted RBP13.23□□□□□ -0.29
VRK3-217ENST00000599538 OR52E2Q8NGJ4 325 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 OR51L1Q8NGJ5 315 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 STT3BQ8TCJ2 826 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 SNRNP27Q8WVK2 155 aaKnown RBP13.23□□□□□ -0.29
VRK3-217ENST00000599538 DNAJA4Q8WW22 397 aaPredicted RBP13.23□□□□□ -0.29
VRK3-217ENST00000599538 ZNRF4Q8WWF5 429 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 DNAJA3Q96EY1 480 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 COX4I2Q96KJ9 171 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 TMED9Q9BVK6 235 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 ISYNA1Q9NPH2 558 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 DAPK2Q9UIK4 370 aa13.23□□□□□ -0.29
VRK3-217ENST00000599538 COL5A1P20908 1838 aaPredicted RBP13.23□□□□□ -0.29
VRK3-217ENST00000599538 TECTAO75443 2155 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 CCDC163A0A0D9SF12 145 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 RIIAD1A6NNX1 92 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 GTPBP1O00178 669 aaKnown RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 ZNF264O43296 627 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 CFIP05156 583 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 CALRP27797 417 aaKnown RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 GTF2E2P29084 291 aaKnown RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 SLC6A6P31641 620 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 SDC2P34741 201 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 HCCSP53701 268 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 EGR4Q05215 589 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 DNASE1L3Q13609 305 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 NR0B2Q15466 257 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 TOMM34Q15785 309 aaPredicted RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 RHBDD2Q6NTF9 364 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 PWWP2BQ6NUJ5 590 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 MAMSTRQ6ZN01 415 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 ATG4DQ86TL0 474 aaPredicted RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 MARCH3Q86UD3 253 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 RFLNBQ8N5W9 214 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 EID2Q8N6I1 236 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 ZNF527Q8NB42 609 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 OR1N1Q8NGS0 311 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 ZPLD1Q8TCW7 415 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 DAZLQ92904 295 aaKnown RBP13.22□□□□□ -0.29
VRK3-217ENST00000599538 MOGAT1Q96PD6 335 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 ALG8Q9BVK2 526 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 HDHD5Q9BXW7 423 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 WWTR1Q9GZV5 400 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 IGHV5-10-1A0A0J9YXX1 117 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 SHISA3A0PJX4 238 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 TBX1O43435 398 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 TSPAN2O60636 221 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 NDUFB2O95178 105 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 HK1P19367 917 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 GABRA5P31644 462 aa13.22□□□□□ -0.29
VRK3-217ENST00000599538 S100A5P33763 92 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms