RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 CCT8L1PA6NM43 557 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 ZNF716A6NP11 495 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 FCMRO60667 390 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 PMS2P2O95744 297 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 AGR2O95994 175 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 CSF3P09919 207 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 BMP4P12644 408 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 CLK1P49759 484 aaKnown RBP18.62■□□□□ 0.57
PNKP-212ENST00000599454 ZNF83P51522 516 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 RPS26P62854 115 aaKnown RBP18.62■□□□□ 0.57
PNKP-212ENST00000599454 MAD2L1Q13257 205 aaPredicted RBP18.62■□□□□ 0.57
PNKP-212ENST00000599454 C16orf62Q7Z3J2 963 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 FAM71CQ8NEG0 241 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 OR52N5Q8NH56 324 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 AGR3Q8TD06 166 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 C3orf30Q96M34 536 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 MUS81Q96NY9 551 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 SERHL2Q9H4I8 314 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 POLE3Q9NRF9 147 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 MKLN1Q9UL63 735 aa18.62■□□□□ 0.57
PNKP-212ENST00000599454 RNF103-CHMP3A0A140T963 221 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 PHF1O43189 567 aaPredicted RBP18.61■□□□□ 0.57
PNKP-212ENST00000599454 MRPL33O75394 65 aaKnown RBP18.61■□□□□ 0.57
PNKP-212ENST00000599454 IGHV3-9P01782 118 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 PGM1P36871 562 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 FABP6P51161 128 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 CLDN8P56748 225 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 CHRNEQ04844 493 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 GRINAQ7Z429 371 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 ZNF563Q8TA94 476 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 MIPOL1Q8TD10 442 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 FAM168AQ92567 244 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 TUBGCP3Q96CW5 907 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 KCNK17Q96T54 332 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 INPP5KQ9BT40 448 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 CCDC106Q9BWC9 280 aa18.61■□□□□ 0.57
PNKP-212ENST00000599454 CENPVL1A0A0U1RR11 272 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 KIAA0513O60268 411 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 F12P00748 615 aaPredicted RBP18.6■□□□□ 0.57
PNKP-212ENST00000599454 CASP9P55211 416 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 SPOCK1Q08629 439 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 GABRA6Q16445 453 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 ATAD3BQ5T9A4 648 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 PROX1Q92786 737 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 MECRQ9BV79 373 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 BEX2Q9BXY8 128 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 FKRPQ9H9S5 495 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 CTPS2Q9NRF8 586 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 PCDHGB4Q9UN71 923 aa18.6■□□□□ 0.57
PNKP-212ENST00000599454 M0R1B8 84 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 RNASET2O00584 256 aaKnown RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 SKAP2O75563 359 aaPredicted RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 G6PDP11413 515 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 THBS2P35442 1172 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 MAGEA8P43361 318 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 CHRNB3Q05901 458 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 SMU1Q2TAY7 513 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 PGS1Q32NB8 556 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 AP1ARQ63HQ0 302 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 CYB5R2Q6BCY4 276 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 B3GLCTQ6Y288 498 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 RIBC1Q8N443 379 aaPredicted RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 C17orf78Q8N4C9 275 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 ZNF525Q8N782 197 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 C1orf162Q8NEQ5 155 aaPredicted RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 ZIM3Q96PE6 472 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 AMBRA1Q9C0C7 1298 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 OR51I1Q9H343 314 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 EXOSC3Q9NQT5 275 aaKnown RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 ASIC5Q9NY37 505 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 NOP53Q9NZM5 478 aaKnown RBP18.59■□□□□ 0.57
PNKP-212ENST00000599454 DCTN4Q9UJW0 460 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 TRAPPC4Q9Y296 219 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 WDR45Q9Y484 360 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 CUBNO60494 3623 aa18.59■□□□□ 0.57
PNKP-212ENST00000599454 HTR3AP46098 478 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 EFNA4P52798 201 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 EMX2Q04743 252 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 MAPK14Q16539 360 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 TYW3Q6IPR3 259 aaKnown RBP18.58■□□□□ 0.56
PNKP-212ENST00000599454 ZCCHC23Q6ZST2 131 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 CLECL1Q8IZS7 167 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 OR8J2Q8NGG1 315 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 C10orf105Q8TEF2 133 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 ARL5BQ96KC2 179 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 SAP130Q9H0E3 1048 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 PARPBPQ9NWS1 579 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 SLC17A7Q9P2U7 560 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 ZDHHC2Q9UIJ5 367 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 AMDHD2Q9Y303 409 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 PMF1-BGLAPU3KQ54 211 aa18.58■□□□□ 0.56
PNKP-212ENST00000599454 A0A1W2PR80 420 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 PDLIM1O00151 329 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 ITGA5P08648 1049 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 NTF4P34130 210 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 TGFBR3Q03167 851 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 OR4F3Q6IEY1 312 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.57■□□□□ 0.56
PNKP-212ENST00000599454 MANSC1Q9H8J5 431 aa18.57■□□□□ 0.56
PNKP-212ENST00000599454 TMEM181Q9P2C4 612 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms