RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ARL5BQ96KC2 179 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 TRNT1Q96Q11 434 aaKnown RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 OR52E6Q96RD3 313 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 PNPOQ9NVS9 261 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 AIG1Q9NVV5 245 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 LIPT1Q9Y234 373 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 MAGED1Q9Y5V3 778 aaPredicted RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 MTORP42345 2549 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 IGKV3D-15A0A087WSY6 115 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 OR5H1A6NKK0 313 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CCT8L1PA6NM43 557 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CLDN24A6NM45 220 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 SDHDO14521 159 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 GPR171O14626 319 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 DNPH1O43598 174 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 BCAS1O75363 584 aaPredicted RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 MRPL33O75394 65 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 RAD51DO75771 328 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 IGHV3-9P01782 118 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 SOD3P08294 240 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ALDOCP09972 364 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 DANCRP0C864 163 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 NR2F1P10589 423 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 IL7RP16871 459 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CCNA2P20248 432 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 EDNRAP25101 427 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CDKN1AP38936 164 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 MAGEA8P43361 318 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CLK1P49759 484 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 POLR2HP52434 150 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 CDH11P55287 796 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 OR2B6P58173 313 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 FAPQ12884 760 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 SYPL1Q16563 259 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 FBXW9Q5XUX1 488 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 NXNQ6DKJ4 435 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 LRRC74BQ6ZQY2 392 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ZNF621Q6ZSS3 439 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ATG4DQ86TL0 474 aaPredicted RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 PIAS4Q8N2W9 510 aaPredicted RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 ANKFN1Q8N957 763 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 GLB1L3Q8NCI6 653 aaPredicted RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 LILRB1Q8NHL6 650 aaPredicted RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 PNPT1Q8TCS8 783 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 WDR60Q8WVS4 1066 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 NEUROG1Q92886 237 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ZBTB9Q96C00 473 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ZG16BQ96DA0 208 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 TEX37Q96LM6 180 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 TRIM2Q9C040 744 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 OR11A1Q9GZK7 315 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 THAP1Q9NVV9 213 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 ASB6Q9NWX5 421 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 CISD1Q9NZ45 108 aaKnown RBP8.66□□□□□ -1.02
VRK3-216ENST00000599342 TMEM181Q9P2C4 612 aa8.66□□□□□ -1.02
VRK3-216ENST00000599342 NF1P21359 2839 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 NUP214P35658 2090 aaPredicted RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 HEATR5AQ86XA9 2040 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TMED7-TICAM2A0A0A6YYA0 188 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 GOLGA8QA0A0J9YX86 632 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TMEM120BA0PK00 339 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 PRAMEF27A3QJZ7 478 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 GOLGA8OA6NCC3 632 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 DPRXA6NFQ7 191 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 CFAP73A6NFT4 308 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 AGAP5A6NIR3 686 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ZNF716A6NP11 495 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 INAFM1C9JVW0 142 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 GOLGA8NF8WBI6 632 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SLCO1B7G3V0H7 640 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 OVOL3O00110 214 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 RFXANKO14593 260 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 AP3D1O14617 1153 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ABCD4O14678 606 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 HDAC3O15379 428 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 EIF1BO60739 113 aaKnown RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 PGM3O95394 542 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ANP32DO95626 131 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 KRT75O95678 551 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 GSNP06396 782 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 DBIP07108 87 aaKnown RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 CHRM4P08173 479 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 KITP10721 976 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 EPHA3P29320 983 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 IDUAP35475 653 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 CDKN2CP42773 168 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SLC35A1P78382 337 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TNK1Q13470 666 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 MPP2Q14168 576 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 PGGHGQ32M88 737 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TNFAIP8L3Q5GJ75 292 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 MRPL2Q5T653 305 aaKnown RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 AP1ARQ63HQ0 302 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ATG16L1Q676U5 607 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 KLHL17Q6TDP4 642 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SEZ6L2Q6UXD5 910 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TMEM108Q6UXF1 575 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 CASP12Q6UXS9 341 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ADGRG3Q86Y34 549 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 PEX5LQ8IYB4 626 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms