RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ATP6V0D2Q8N8Y2 350 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 BHLHE23Q8NDY6 225 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 DNAJA4Q8WW22 397 aaPredicted RBP2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 SEC22AQ96IW7 307 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 RBM14Q96PK6 669 aaKnown RBP2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 PSKH2Q96QS6 385 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 CCNL2Q96S94 520 aaPredicted RBP2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 MAPKAP1Q9BPZ7 522 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF670Q9BS34 389 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 PARD6BQ9BYG5 372 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 NMUR2Q9GZQ4 415 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 PRR34Q9NV39 138 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 CDH9Q9ULB4 789 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 PRPF19Q9UMS4 504 aaKnown RBP2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 POLDIP2Q9Y2S7 368 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 TIMM10BQ9Y5J6 103 aa2.71□□□□□ -1.98
SMCHD1-209ENST00000583441 COL4A4P53420 1690 aaPredicted RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 FAM240BA0A1B0GVZ2 78 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 HAT1O14929 419 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 LY6G6DO95868 133 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 HSPB1P04792 205 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ALOX5P09917 674 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 OR8U8P0C7N1 319 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 EPS15P42566 896 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 OR3A4PP47883 348 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CCT3P49368 545 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CASP4P49662 377 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CRYBB1P53674 252 aaPredicted RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 HSPA2P54652 639 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF45Q02386 682 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 C1orf61Q13536 156 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 FILIP1LQ4L180 1135 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 FHL5Q5TD97 284 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ATL3Q6DD88 541 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ZSCAN25Q6NSZ9 544 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 UTS2BQ765I0 119 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 EFL1Q7Z2Z2 1120 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 TMEM179BQ7Z7N9 219 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF589Q86UQ0 364 aaPredicted RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 FBXO16Q8IX29 292 aaPredicted RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF100Q8IYN0 542 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 EIF1ADQ8N9N8 165 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 BBS1Q8NFJ9 593 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 SHC3Q92529 594 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CNOT6LQ96LI5 555 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 SECISBP2Q96T21 854 aaKnown RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 NPAS2Q99743 824 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 NICN1Q9BSH3 213 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CAPS2Q9BXY5 557 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ZDHHC11Q9H8X9 412 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 NHEJ1Q9H9Q4 299 aaPredicted RBP2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 POPDC2Q9HBU9 364 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 RAB18Q9NP72 206 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 MARCH5Q9NX47 278 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 LCMT1Q9UIC8 334 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 ERVW-1Q9UQF0 538 aa2.7□□□□□ -1.98
SMCHD1-209ENST00000583441 CLSPNQ9HAW4 1339 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 PRRC2AP48634 2157 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF318Q5VUA4 2279 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 ZFP92A6NM28 416 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 IDSB3KWA1 339 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 E7ENQ6 273 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 GOLGA8SH3BPF8 625 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 KIF2AO00139 706 aaPredicted RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 HIP1O00291 1037 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 HDAC3O15379 428 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 MED7O43513 233 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 HCRTR1O43613 425 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 PRKAB2O43741 272 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 PFKFB2O60825 505 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 LYPD3O95274 346 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 CLDN9O95484 217 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 KLK2P20151 261 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 GCAP28676 217 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 RFC4P35249 363 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 BTDP43251 543 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 AIF1P55008 147 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 DIO3P55073 304 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 UBE2HP62256 183 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 RPL23AP62750 156 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 EGFEM1PQ0D2K5 195 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 KLHL38Q2WGJ6 581 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 C1orf220Q5T0J3 134 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 C11orf71Q6IPW1 123 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 TGIF2LXQ8IUE1 241 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 CCDC71LQ8N9Z2 235 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 MFSD9Q8NBP5 474 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 FAM83FQ8NEG4 500 aaPredicted RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 OR10H4Q8NGA5 316 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 OR2AP1Q8NGE2 309 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 OR5D13Q8NGL4 314 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 RAPGEF5Q92565 580 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 CLCC1Q96S66 551 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 COPS8Q99627 209 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 GAL3ST1Q99999 423 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 SELENOIQ9C0D9 397 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 SLITRK2Q9H156 845 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 SGK2Q9HBY8 427 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 MCCC2Q9HCC0 563 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 CD274Q9NZQ7 290 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms