RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 EFNB3Q15768 340 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ADRM1Q16186 407 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 HIKESHIQ53FT3 197 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF678Q5SXM1 525 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 C1QTNF12Q5T7M4 302 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 NOXRED1Q6NXP6 359 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SPATA21Q7Z572 469 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 TEX29Q8N6K0 151 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 FAM76AQ8TAV0 307 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ADAMTS15Q8TE58 950 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SLC25A43Q8WUT9 341 aaPredicted RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 TMEM234Q8WY98 164 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ST8SIA1Q92185 356 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 MRPL24Q96A35 216 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 PPCDCQ96CD2 204 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 TMEM237Q96Q45 408 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SLC38A2Q96QD8 506 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 LRRC37BQ96QE4 947 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 THUMPD3Q9BV44 507 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SUCNR1Q9BXA5 334 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 PIGUQ9H490 435 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 MID1IP1Q9NPA3 183 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 DUSP22Q9NRW4 184 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ZCCHC3Q9NUD5 404 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 UTP11Q9Y3A2 253 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 DTNAQ9Y4J8 743 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SPIN1Q9Y657 262 aaPredicted RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SERTM1A2A2V5 107 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 SEC22BO75396 215 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 CRCPO75575 148 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 KRT33AO76009 404 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 BCL10O95999 233 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 MSMBP08118 114 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 HOXB1P14653 301 aaPredicted RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 NPR2P20594 1047 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 IMPDH1P20839 514 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 MPGP29372 298 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 MAGEA12P43365 314 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 GPR6P46095 362 aaPredicted RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 SERPINB9P50453 376 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 ARFIP2P53365 341 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 SLC16A1P53985 500 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 OR2B6P58173 313 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 UBE2NP61088 152 aaKnown RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 NAAAQ02083 359 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 TP53BP2Q13625 1128 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF385BQ569K4 471 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 DCST2Q5T1A1 773 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 TSPO2Q5TGU0 170 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 BPIFB2Q8N4F0 458 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 TMEM151AQ8N4L1 468 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 LRRC17Q8N6Y2 441 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 OR4F15Q8NGB8 312 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 OR51F2Q8NH61 342 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 CLDND2Q8NHS1 167 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 FAM120BQ96EK7 910 aaKnown RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 ARL5BQ96KC2 179 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 STACQ99469 402 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 KATNB1Q9BVA0 655 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 CDC42EP4Q9H3Q1 356 aaKnown RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 ACSS3Q9H6R3 686 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 OBP2BQ9NPH6 170 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 RRAGDQ9NQL2 400 aaPredicted RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 ACSS1Q9NUB1 689 aaPredicted RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 TREM2Q9NZC2 230 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 FAF1Q9UNN5 650 aaPredicted RBP6.35□□□□□ -1.39
VPS4A-203ENST00000564399 SLC9A8Q9Y2E8 581 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 FLVCR1Q9Y5Y0 555 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 VWFP04275 2813 aa6.35□□□□□ -1.39
VPS4A-203ENST00000564399 LOC105371242A0A075B767 164 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ESPNB1AK53 854 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TRIM49D1C9J1S8 452 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ETV2O00321 342 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ANKRD28O15084 1053 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 RSL1D1O76021 490 aaKnown RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 PMS2P2O95744 297 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 PNPP00491 289 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CSTAP01040 98 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TFP02787 698 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 GSTA1P08263 222 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ADRA2AP08913 450 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CECR9P0C854 216 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 UBTFL6P0CB48 400 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 SAGP10523 405 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CCNA2P20248 432 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ATP5F1P24539 256 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 RYKP34925 604 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 THBS4P35443 961 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 APOBEC1P41238 236 aaKnown RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 KHKP50053 298 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 FOXA1P55317 472 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 GNG11P61952 73 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TUBA1BP68363 451 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TUBA4AP68366 448 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 GPR68Q15743 365 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TBRG1Q3YBR2 411 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 EXOSC6Q5RKV6 272 aaKnown RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 PDZK1Q5T2W1 519 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ANKRD16Q6P6B7 361 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms