RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC103Q8IW40 242 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 PHC2Q8IXK0 858 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 OR10H5Q8NGA6 315 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 OR4A15Q8NGL6 344 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 SLC25A43Q8WUT9 341 aaPredicted RBP14.84□□□□□ -0.03
CLN3-211ENST00000564091 RAB8BQ92930 207 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 PPP1R36Q96LQ0 422 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 DHRS9Q9BPW9 319 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 OR11A1Q9GZK7 315 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 CBLN4Q9NTU7 201 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 EXD2Q9NVH0 621 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 CHRNA9Q9UGM1 479 aa14.84□□□□□ -0.03
CLN3-211ENST00000564091 CLDN24A6NM45 220 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 M0R1B8 84 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 RNASET2O00584 256 aaKnown RBP14.83□□□□□ -0.04
CLN3-211ENST00000564091 KIAA0513O60268 411 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 CPSF4O95639 269 aaKnown RBP14.83□□□□□ -0.04
CLN3-211ENST00000564091 BPGMP07738 259 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 CCNA2P20248 432 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 PTAFRP25105 342 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 APOBEC1P41238 236 aaKnown RBP14.83□□□□□ -0.04
CLN3-211ENST00000564091 FABP6P51161 128 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 CHRFAM7AQ494W8 412 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 MUC15Q8N387 334 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 FAM71CQ8NEG0 241 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 OR52E4Q8NGH9 312 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 ZHX1-C8orf76Q96EF9 292 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 ASB6Q9NWX5 421 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 NOP53Q9NZM5 478 aaKnown RBP14.83□□□□□ -0.04
CLN3-211ENST00000564091 MGAT4BQ9UQ53 548 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 WDR45Q9Y484 360 aa14.83□□□□□ -0.04
CLN3-211ENST00000564091 SPIN1Q9Y657 262 aaPredicted RBP14.83□□□□□ -0.04
CLN3-211ENST00000564091 SCN2BO60939 215 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 MRPL33O75394 65 aaKnown RBP14.82□□□□□ -0.04
CLN3-211ENST00000564091 C1QCP02747 245 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 DHRS4L1P0CG22 281 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 OR2B6P58173 313 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 PHC1P78364 1004 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 PLAURQ03405 335 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 FUT5Q11128 374 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 MAD2L1Q13257 205 aaPredicted RBP14.82□□□□□ -0.04
CLN3-211ENST00000564091 RAB35Q15286 201 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 PDCD2Q16342 344 aaPredicted RBP14.82□□□□□ -0.04
CLN3-211ENST00000564091 TMEM249Q2WGJ8 235 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 C6orf52Q5T4I8 152 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 C9orf135Q5VTT2 229 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 EMBQ6PCB8 327 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 KLHL17Q6TDP4 642 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 CLEC2AQ6UVW9 174 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 FRRS1Q6ZNA5 592 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 GRINAQ7Z429 371 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 ADGRG3Q86Y34 549 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 FBXL14Q8N1E6 418 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 RIBC1Q8N443 379 aaPredicted RBP14.82□□□□□ -0.04
CLN3-211ENST00000564091 ZNF525Q8N782 197 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 MIPOL1Q8TD10 442 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 ROPN1LQ96C74 230 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 MUS81Q96NY9 551 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 TNFRSF13CQ96RJ3 184 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 AKTIPQ9H8T0 292 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 ASIC5Q9NY37 505 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 TAS2R16Q9NYV7 291 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 PCDHGB4Q9UN71 923 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 SLC35A3Q9Y2D2 325 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 HDGFL3Q9Y3E1 203 aa14.82□□□□□ -0.04
CLN3-211ENST00000564091 PRAMEF27A3QJZ7 478 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 GPR171O14626 319 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 ANKRD28O15084 1053 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 ITM2AO43736 263 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 PMS2P2O95744 297 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 ITGA5P08648 1049 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 SLC16A1P53985 500 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 GABRA6Q16445 453 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 ATAD3BQ5T9A4 648 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 WDR31Q8NA23 367 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 OR8J2Q8NGG1 315 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 PIGXQ8TBF5 258 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 PKNOX2Q96KN3 472 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 DPY30Q9C005 99 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 MANSC1Q9H8J5 431 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 MALT1Q9UDY8 824 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 LGALS13Q9UHV8 139 aa14.81□□□□□ -0.04
CLN3-211ENST00000564091 PRSS51A0A1B0GVH4 220 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 WDR91A4D1P6 747 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 AP3D1O14617 1153 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 AGR2O95994 175 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 NUDT17P0C025 328 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 UQCRC2P22695 453 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 IDH2P48735 452 aaKnown RBP14.8□□□□□ -0.04
CLN3-211ENST00000564091 DSCR9P59020 149 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 KCNJ10P78508 379 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 IFFO1Q0D2I5 559 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 SAXO2Q658L1 398 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 CASP12Q6UXS9 341 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 NUDCD3Q8IVD9 361 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 DEPDC4Q8N2C3 294 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 ARFGAP2Q8N6H7 521 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 ZNF781Q8N8C0 355 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 TMEM158Q8WZ71 300 aa14.8□□□□□ -0.04
CLN3-211ENST00000564091 CNOT9Q92600 299 aaKnown RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms