RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CTAGE5O15320 804 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 TRIM3O75382 744 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 STX11O75558 287 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SLC2A10O95528 541 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 CSF2P04141 144 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 PCCBP05166 539 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 UMPSP11172 480 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 PSMA2P25787 234 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 ADSSP30520 456 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SOX6P35712 828 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 GYG1P46976 350 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 HSD17B7P56937 341 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 DSCR10P59022 87 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 PUDPQ08623 228 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SLC10A1Q14973 349 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 ZNF57Q68EA5 555 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SLC25A24Q6NUK1 477 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 LANCL3Q6ZV70 420 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 ARMCX2Q7L311 632 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 LRRC70Q7Z2Q7 622 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 NAXDQ8IW45 347 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SLC39A11Q8N1S5 342 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 BPIFB2Q8N4F0 458 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SPEM1Q8N4L4 309 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 NANPQ8TBE9 248 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 RAB7BQ96AH8 199 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 C18orf25Q96B23 403 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 PPP1R16AQ96I34 528 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 AKR1E2Q96JD6 320 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 C4orf36Q96KX1 117 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 POLR3FQ9H1D9 316 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 FARSBQ9NSD9 589 aaKnown RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 HYPKQ9NX55 129 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 DOCK1Q14185 1865 aa3.72□□□□□ -1.81
LIMA1-205ENST00000550592 ANKRD17O75179 2603 aaKnown RBP3.72□□□□□ -1.81
LIMA1-205ENST00000550592 C2CD3Q4AC94 2353 aa3.71□□□□□ -1.81
LIMA1-205ENST00000550592 CLSPNQ9HAW4 1339 aa3.71□□□□□ -1.81
LIMA1-205ENST00000550592 A0A1B0GUL6 1792 aa3.71□□□□□ -1.81
LIMA1-205ENST00000550592 CDK5RAP2Q96SN8 1893 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 PPIAL4CA0A0B4J2A2 164 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 FAM74A7A6NL05 159 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 A8MX80 341 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 IQCF3P0C7M6 154 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 PPIAL4GP0DN37 164 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 EPB41P11171 864 aaKnown RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 PGAM2P15259 253 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 DRD5P21918 477 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 ACVR1BP36896 505 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 FNTAP49354 379 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 NOVA1P51513 510 aaKnown RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 RIPPLY3P57055 190 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 ERVPABLB-1P60509 514 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 SLC1A5Q15758 541 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 TIMM50Q3ZCQ8 353 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 TMEM52BQ4KMG9 183 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 FAM74A3Q4VXF1 159 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 CAVIN4Q5BKX8 364 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 GALNT17Q6IS24 598 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 FBXL22Q6P050 247 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 TMCO2Q7Z6W1 182 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 IFNEQ86WN2 208 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 Q8N9G6 341 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 ZSCAN4Q8NAM6 433 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 GMCL1P1Q8NEA9 526 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 OR2T34Q8NGX1 318 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 ADAMTS16Q8TE57 1224 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 THRSPQ92748 146 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 ANKRD9Q96BM1 317 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-205ENST00000550592 TM2D1Q9BX74 207 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 GSDMCQ9BYG8 508 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 RHOJQ9H4E5 214 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 PALMDQ9NP74 551 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 HOXC10Q9NYD6 342 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 SMC3Q9UQE7 1217 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 SPACA6W5XKT8 324 aa3.71□□□□□ -1.82
LIMA1-205ENST00000550592 SPEF2Q9C093 1822 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 TET1Q8NFU7 2136 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 MYO9AB2RTY4 2548 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 A0A1W2PQ72 361 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 J3QKU1 62 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 TSC22D2O75157 780 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 B3GAT3O94766 335 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 HBQ1P09105 142 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 MAGEA9P43362 315 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 NTHL1P78549 312 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 DEFB103AP81534 67 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 SNTB2Q13425 540 aaKnown RBP3.7□□□□□ -1.82
LIMA1-205ENST00000550592 DPYSL3Q14195 570 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 ATXN7L3Q14CW9 347 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-205ENST00000550592 KRTAP27-1Q3LI81 207 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 USH1GQ495M9 461 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 SLC36A3Q495N2 470 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 NADK2Q4G0N4 442 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 CELF3Q5SZQ8 465 aaKnown RBP3.7□□□□□ -1.82
LIMA1-205ENST00000550592 FAM120AOSQ5T036 256 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 ATAD3CQ5T2N8 411 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 OLFML2AQ68BL7 652 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 SCYL2Q6P3W7 929 aa3.7□□□□□ -1.82
LIMA1-205ENST00000550592 CXCL17Q6UXB2 119 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms