RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SMPDL3AQ92484 453 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 RBPMSQ93062 196 aaKnown RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ST6GAL2Q96JF0 529 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 AIFM2Q9BRQ8 373 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ALG8Q9BVK2 526 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 DPH1Q9BZG8 443 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF350Q9GZX5 532 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CHMP1AQ9HD42 196 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CENPMQ9NSP4 180 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 FBXL12Q9NXK8 326 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 USP36Q9P275 1121 aaKnown RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 BTNL2Q9UIR0 455 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 KLHL21Q9UJP4 597 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 COA3Q9Y2R0 106 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 A0A1B0GVI7 797 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 C9orf172C9J069 976 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 H3BML4 177 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SLC31A1O15431 190 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CCL16O15467 120 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 MAGEB4O15481 346 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 HYAL3O43820 417 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 TCRBP04435 133 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SRCP12931 536 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ACADLP28330 430 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 PKLRP30613 574 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 MPIP34949 423 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ETV5P41161 510 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 KHKP50053 298 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ETV1P50549 477 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 PGDP52209 483 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 E2F1Q01094 437 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 MC2RQ01718 297 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF155Q12901 538 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF169Q14929 603 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CCSMST1Q4G0I0 132 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ACSM3Q53FZ2 586 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 RAB41Q5JT25 222 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 PRAMEF9Q5VWM5 478 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 LIPJQ5W064 366 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 FAAP20Q6NZ36 180 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 BMP8AQ7Z5Y6 402 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 VRK3Q8IV63 474 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SIAH3Q8IW03 269 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 MSRB3Q8IXL7 192 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 MMP21Q8N119 569 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 GATSQ8NAP1 163 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 RELL2Q8NC24 303 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 NAXEQ8NCW5 288 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 OR4M1Q8NGD0 313 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF563Q8TA94 476 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 OSTF1Q92882 214 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SLC25A36Q96CQ1 311 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ECHDC3Q96DC8 303 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CAMK1GQ96NX5 476 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 GPER1Q99527 375 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SSBP4Q9BWG4 385 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 METTL8Q9H825 291 aaKnown RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 FLVCR2Q9UPI3 526 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 KCNK6Q9Y257 313 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 COL27A1Q8IZC6 1860 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 NPIPA5A0A0B4J1W7 369 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 GXYLT2A0PJZ3 443 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 NPIPA7E9PJI5 369 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 STC2O76061 302 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 C1QBP02746 253 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 GKN3PP0CG01 181 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 NPIPA8P0DM63 369 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 C1GALT1C1LP0DN25 315 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF3P17036 446 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 UQCRC2P22695 453 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 CLCN7P51798 805 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 BTN3A2P78410 334 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 MLLT11Q13015 90 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 AIMP2Q13155 320 aaKnown RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 GPR176Q14439 515 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 PUM1Q14671 1186 aaKnown RBP eCLIP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ZNHIT3Q15649 155 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 BCL2A1Q16548 175 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 MANEALQ5VSG8 457 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 MLIPQ5VWP3 458 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ZDHHC20Q5W0Z9 365 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 VASNQ6EMK4 673 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ULK3Q6PHR2 472 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 APOOLQ6UXV4 268 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 GDPD4Q6W3E5 623 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 NDUFAF7Q7L592 441 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 PEG10Q86TG7 708 aaKnown RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 AMZ2Q86W34 360 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 SDR16C5Q8N3Y7 309 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 BMPERQ8N8U9 685 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 IGSF21Q96ID5 467 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 LMLNQ96KR4 655 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 SLC6A7Q99884 636 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 GPR174Q9BXC1 333 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF436Q9C0F3 470 aaPredicted RBP5.09□□□□□ -1.6
LIMA1-203ENST00000547825 NIPAL2Q9H841 368 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 ERVMER34-1Q9H9K5 563 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 MYOTQ9UBF9 498 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 VPS13AQ96RL7 3174 aa5.09□□□□□ -1.6
LIMA1-203ENST00000547825 WDR87Q6ZQQ6 2873 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms