RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SIRT3Q9NTG7 399 aaPredicted RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 ZCCHC3Q9NUD5 404 aaKnown RBP11.1□□□□□ -0.63
SCAF11-208ENST00000546534 DCTN4Q9UJW0 460 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 DTNAQ9Y4J8 743 aa11.1□□□□□ -0.63
SCAF11-208ENST00000546534 HEATR1Q9H583 2144 aaKnown RBP11.09□□□□□ -0.63
SCAF11-208ENST00000546534 TMEM89A2RUT3 159 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 B9A039 149 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 DNAJA2O60884 412 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 SNRPAP09012 282 aaKnown RBP11.09□□□□□ -0.63
SCAF11-208ENST00000546534 TFPIP10646 304 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 UBL4AP11441 157 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 SLC16A1P53985 500 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 PRPS1P60891 318 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 PSMA6P60900 246 aaKnown RBP11.09□□□□□ -0.63
SCAF11-208ENST00000546534 PDE7AQ13946 482 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ADIPOQQ15848 244 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 CASP12Q6UXS9 341 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 DEF8Q6ZN54 512 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 CCDC103Q8IW40 242 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 C1orf162Q8NEQ5 155 aaPredicted RBP11.09□□□□□ -0.63
SCAF11-208ENST00000546534 CLHC1Q8NHS4 586 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 PIGXQ8TBF5 258 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ADAMTS15Q8TE58 950 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ST8SIA1Q92185 356 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ZHX1-C8orf76Q96EF9 292 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ARL5BQ96KC2 179 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 TSSK3Q96PN8 268 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 CCT7Q99832 543 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 PLK3Q9H4B4 646 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 TNFRSF12AQ9NP84 129 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 CA10Q9NS85 328 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 BAIAP2L1Q9UHR4 511 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 ZNF180Q9UJW8 692 aa11.09□□□□□ -0.63
SCAF11-208ENST00000546534 IGHV1-18A0A0C4DH31 117 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 KLF11O14901 512 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 CYP7B1O75881 506 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 RGS9O75916 674 aaPredicted RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SNUPNO95149 360 aaKnown RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 OR4A8P0C604 315 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 DAOP14920 347 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SDC1P18827 310 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 PGCP20142 388 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 PPOXP50336 477 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 IDH3GP51553 393 aaPredicted RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 DVL1P1P54792 670 aaPredicted RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SLC7A5Q01650 507 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 TGFBR3Q03167 851 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 LGALS3BPQ08380 585 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SKP2Q13309 424 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 TRIP10Q15642 601 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 PDZK1Q5T2W1 519 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 TSPO2Q5TGU0 170 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SLC25A43Q8WUT9 341 aaPredicted RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 METTL2AQ96IZ6 378 aaKnown RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 ACTRT3Q9BYD9 372 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 LAT2Q9GZY6 243 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 RAB1BQ9H0U4 201 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 CDC42EP4Q9H3Q1 356 aaKnown RBP11.08□□□□□ -0.64
SCAF11-208ENST00000546534 ACER3Q9NUN7 267 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 UPB1Q9UBR1 384 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 PTGDR2Q9Y5Y4 395 aa11.08□□□□□ -0.64
SCAF11-208ENST00000546534 SERINC4A6NH21 518 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 FAM157AC9JC47 383 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 CRCPO75575 148 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 PMS2P2O95744 297 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 WNT11O96014 354 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 CDH2P19022 906 aaPredicted RBP11.07□□□□□ -0.64
SCAF11-208ENST00000546534 PCMT1P22061 227 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 PRPH2P23942 346 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 MAGEA8P43361 318 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 CCNIQ14094 377 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 EFNB3Q15768 340 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 HIKESHIQ53FT3 197 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 PDLIM3Q53GG5 364 aaPredicted RBP11.07□□□□□ -0.64
SCAF11-208ENST00000546534 C1QTNF12Q5T7M4 302 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 VHLLQ6RSH7 139 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 RELL1Q8IUW5 271 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 ZCCHC24Q8N2G6 241 aaKnown RBP11.07□□□□□ -0.64
SCAF11-208ENST00000546534 TMEM234Q8WY98 164 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 FCRL1Q96LA6 429 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 OR11A1Q9GZK7 315 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 CTPS2Q9NRF8 586 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 GPATCH2Q9NW75 528 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 C1orf109Q9NX04 203 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 KCNE5Q9UJ90 142 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 FAF1Q9UNN5 650 aaPredicted RBP11.07□□□□□ -0.64
SCAF11-208ENST00000546534 FLVCR1Q9Y5Y0 555 aa11.07□□□□□ -0.64
SCAF11-208ENST00000546534 CENPVL1A0A0U1RR11 272 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 B4DSR2 109 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 PDE5AO76074 875 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 CSTAP01040 98 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 UBTFL6P0CB48 400 aaPredicted RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 MPGP29372 298 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 APOBEC1P41238 236 aaKnown RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 CCT3P49368 545 aaKnown RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 OR2B6P58173 313 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 TP53BP2Q13625 1128 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 RIN1Q13671 783 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 OCLNQ16625 522 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 RFTN2Q52LD8 501 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms