RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OGDHQ02218 1023 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 GRB7Q14451 532 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 HSP90AB3PQ58FF7 597 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 RNLSQ5VYX0 342 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 CGB2Q6NT52 195 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 ENPP6Q6UWR7 440 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 CXCL17Q6UXB2 119 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 H2BFWTQ7Z2G1 175 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 ECHDC2Q86YB7 292 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 CCDC65Q8IXS2 484 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 SVOPLQ8N434 492 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 ST8SIA1Q92185 356 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 RAPGEF5Q92565 580 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 C12orf42Q96LP6 360 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 CLCC1Q96S66 551 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 RNF2Q99496 336 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 RAB34Q9BZG1 259 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 AZI2Q9H6S1 392 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 RABL2AQ9UBK7 228 aaPredicted RBP5.59□□□□□ -1.51
NUP54-215ENST00000514313 PISDQ9UG56 409 aa5.59□□□□□ -1.51
NUP54-215ENST00000514313 ATP10AO60312 1499 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 IDSB3KWA1 339 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 GAPDHP04406 335 aaKnown RBP5.58□□□□□ -1.52
NUP54-215ENST00000514313 ZNF853P0CG23 659 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 RNH1P13489 461 aaKnown RBP5.58□□□□□ -1.52
NUP54-215ENST00000514313 GDF1P27539 372 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 MDH2P40926 338 aaKnown RBP5.58□□□□□ -1.52
NUP54-215ENST00000514313 GBE1Q04446 702 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 Q1RN00 199 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 TCTEX1D4Q5JR98 221 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 GSG1LQ6UXU4 331 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 BHLHA9Q7RTU4 235 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 SKA3Q8IX90 412 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 KLHL30-AS1Q8NEE0 82 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 SDR9C7Q8NEX9 313 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 RAB3IL1Q8TBN0 382 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 VSIG2Q96IQ7 327 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 CNOT6LQ96LI5 555 aaKnown RBP5.58□□□□□ -1.52
NUP54-215ENST00000514313 SPATA7Q9P0W8 599 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 PLLPQ9Y342 182 aa5.58□□□□□ -1.52
NUP54-215ENST00000514313 POGZQ7Z3K3 1410 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 CLSPNQ9HAW4 1339 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 A0A1W2PPE3 182 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 A0A1W2PQ72 361 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 E9PBE3 544 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 UPK3AO75631 287 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 SLITRK3O94933 977 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 NDUFB10O96000 172 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 IGLL1P15814 213 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 FASP25445 335 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 HTR1FP30939 366 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 PTGDSP41222 190 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 KIR2DS2P43631 304 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 HNRNPA3P51991 378 aaKnown RBP5.57□□□□□ -1.52
NUP54-215ENST00000514313 SLC10A7Q0GE19 358 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 PLD1Q13393 1074 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 GK3PQ14409 553 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 METTL11BQ5VVY1 283 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 C17orf82Q86X59 251 aaPredicted RBP5.57□□□□□ -1.52
NUP54-215ENST00000514313 BBS5Q8N3I7 341 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.57□□□□□ -1.52
NUP54-215ENST00000514313 HTR3CQ8WXA8 447 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 FMO2Q99518 471 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 KLHDC3Q9BQ90 382 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 RNF126Q9BV68 326 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 SLITRK2Q9H156 845 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 NHEJ1Q9H9Q4 299 aaPredicted RBP5.57□□□□□ -1.52
NUP54-215ENST00000514313 BFARQ9NZS9 450 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 SLC7A8Q9UHI5 535 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 COPS3Q9UNS2 423 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 CSAG2Q9Y5P2 127 aa5.57□□□□□ -1.52
NUP54-215ENST00000514313 PPIAL4EA0A075B759 164 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 GOLGA8SH3BPF8 625 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 PPIAL4FP0DN26 164 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 GATA1P15976 413 aaPredicted RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 GATA2P23769 480 aaPredicted RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 SSR1P43307 286 aaKnown RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 ENPEPQ07075 957 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 SRSF5Q13243 272 aaKnown RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 DUSP7Q16829 419 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 SBK1Q52WX2 424 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 GPRC6AQ5T6X5 926 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 ARMC12Q5T9G4 340 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 METAP1DQ6UB28 335 aaPredicted RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 GTSCR1Q86UQ5 136 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 CADM2Q8N3J6 435 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 ZNF485Q8NCK3 441 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 OR52H1Q8NGJ2 320 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 OR52K2Q8NGK3 314 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 OR1L6Q8NGR2 347 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 KCNG3Q8TAE7 436 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 TYMSOSQ8TAI1 123 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 CXorf40BQ96DE9 158 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 SIGLEC12Q96PQ1 595 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 ANP32EQ9BTT0 268 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 NUP58Q9BVL2 599 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 KRTAP2-2Q9BYT5 123 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 RBKSQ9H477 322 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 NMRAL1Q9HBL8 299 aa5.56□□□□□ -1.52
NUP54-215ENST00000514313 FLVCR1Q9Y5Y0 555 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms