RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HIF1ANQ9NWT6 349 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 UPB1Q9UBR1 384 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 USP22Q9UPT9 525 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 UTP11Q9Y3A2 253 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 PCDHGB1Q9Y5G3 927 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 CRYAAP02489 173 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 DDX5P17844 614 aaKnown RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 EPHA1P21709 976 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 PHBP35232 272 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SLC1A3P43003 542 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 MAGEA8P43361 318 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SERPINB9P50453 376 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 PRKAA2P54646 552 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 H3F3AP84243 136 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 MERTKQ12866 999 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 PDE7AQ13946 482 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 HIKESHIQ53FT3 197 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 CCDC103Q8IW40 242 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 ZCCHC24Q8N2G6 241 aaKnown RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 LRRC17Q8N6Y2 441 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 ZNF614Q8N883 585 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SPATA4Q8NEY3 305 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 UBASH3BQ8TF42 649 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 ARL5BQ96KC2 179 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 PAFAH2Q99487 392 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 NAPGQ99747 312 aaPredicted RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 KCNS3Q9BQ31 491 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 THUMPD3Q9BV44 507 aaKnown RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 FUT8Q9BYC5 575 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 REEP4Q9H6H4 257 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 ZNF442Q9H7R0 627 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SIRT3Q9NTG7 399 aaPredicted RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 ACER3Q9NUN7 267 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 PARPBPQ9NWS1 579 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SLC9A8Q9Y2E8 581 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 GRIP1Q9Y3R0 1128 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 CCL27Q9Y4X3 112 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 FLVCR1Q9Y5Y0 555 aa9.49□□□□□ -0.89
DDX41-216ENST00000513562 SPIN1Q9Y657 262 aaPredicted RBP9.49□□□□□ -0.89
DDX41-216ENST00000513562 TRIM49D1C9J1S8 452 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 hCG_2039718K7EN88 272 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 KLF11O14901 512 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 URI1O94763 535 aaPredicted RBP9.48□□□□□ -0.89
DDX41-216ENST00000513562 MSMBP08118 114 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 IGFBP1P08833 259 aaPredicted RBP9.48□□□□□ -0.89
DDX41-216ENST00000513562 TFPIP10646 304 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 PAX7P23759 505 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 PRPH2P23942 346 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 ATP5F1P24539 256 aaPredicted RBP9.48□□□□□ -0.89
DDX41-216ENST00000513562 ASMTP46597 345 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 NAAAQ02083 359 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 PDZK1Q5T2W1 519 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 VHLLQ6RSH7 139 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 TREML4Q6UXN2 200 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 THSD4Q6ZMP0 1018 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 SLC22A9Q8IVM8 553 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 TEX29Q8N6K0 151 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 NUP37Q8NFH4 326 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 OR4F15Q8NGB8 312 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 TMEM234Q8WY98 164 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 FCRL1Q96LA6 429 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 DOK1Q99704 481 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 CCT7Q99832 543 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 CCDC106Q9BWC9 280 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 ACTRT3Q9BYD9 372 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 LAT2Q9GZY6 243 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 RAB17Q9H0T7 212 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 GSTO2Q9H4Y5 243 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 MID1IP1Q9NPA3 183 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 RRAGDQ9NQL2 400 aaPredicted RBP9.48□□□□□ -0.89
DDX41-216ENST00000513562 NINJ2Q9NZG7 142 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 TMEM216Q9P0N5 145 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 SH3BP4Q9P0V3 963 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 CRNNQ9UBG3 495 aaPredicted RBP9.48□□□□□ -0.89
DDX41-216ENST00000513562 CHRNA9Q9UGM1 479 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 HDGFL3Q9Y3E1 203 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 KCNE3Q9Y6H6 103 aa9.48□□□□□ -0.89
DDX41-216ENST00000513562 LYNX1G3V0Z9 82 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 AKAP10O43572 662 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 IGLV1-44P01699 117 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 TFP02787 698 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 KRT16P08779 473 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 CECR9P0C854 216 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 LYNX1P0DP58 116 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 SDC1P18827 310 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 EFNA1P20827 205 aaPredicted RBP9.47□□□□□ -0.89
DDX41-216ENST00000513562 CALCRP30988 508 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 APOBEC1P41238 236 aaKnown RBP9.47□□□□□ -0.89
DDX41-216ENST00000513562 GNG11P61952 73 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 IL1RL1Q01638 556 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 C3orf36Q3SXR2 165 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 TBRG1Q3YBR2 411 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 MIDNQ504T8 468 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 C1orf229Q6ZS94 237 aaPredicted RBP9.47□□□□□ -0.89
DDX41-216ENST00000513562 CLDND2Q8NHS1 167 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 ADAMTS15Q8TE58 950 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 MRPL24Q96A35 216 aaKnown RBP9.47□□□□□ -0.89
DDX41-216ENST00000513562 TMEM45BQ96B21 275 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 DNAJA3Q96EY1 480 aa9.47□□□□□ -0.89
DDX41-216ENST00000513562 TSSK3Q96PN8 268 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms