RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	DDIT4L	Q96D03	193 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC41A3	Q96GZ6	507 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	RSRC1	Q96IZ7	334 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PRRC1	Q96M27	445 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	KLHL15	Q96M94	604 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	PRDM14	Q9GZV8	571 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	MAGIX	Q9H6Y5	334 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	C12orf10	Q9HB07	376 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC7A7	Q9UM01	511 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	AURKC	Q9UQB9	309 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ENPP4	Q9Y6X5	453 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZGRF1	Q86YA3	2104 aa		13.13	□□□□□ -0.31
BRCA1-223	ENST00000494123	SMG1	Q96Q15	3661 aa	Known RBP	13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	DHRS12	A0PJE2	317 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	TMEM72	A0PK05	275 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	CHP2	O43745	196 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	EFNA2	O43921	213 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR5F1	O95221	314 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	UMPS	P11172	480 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	CPN1	P15169	458 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	ERF	P50548	548 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	MAP2K6	P52564	334 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	CLDN18	P56856	261 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	CLDN20	P56880	219 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	RPS3A	P61247	264 aa	Known RBP	13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	VLDLR	P98155	873 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	MRPL49	Q13405	166 aa	Known RBP	13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	GXYLT1	Q4G148	440 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	SYT14P1	Q58G82	188 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	PDSS1	Q5T2R2	415 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF585A	Q6P3V2	769 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZDHHC21	Q8IVQ6	265 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	SLC38A4	Q969I6	547 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	WDYHV1	Q96HA8	205 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF300	Q96RE9	604 aa	Predicted RBP	13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	FNDC11	Q9BVV2	318 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	PNPLA3	Q9NST1	481 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	GTF3C1	Q12789	2109 aa		13.12	□□□□□ -0.31
BRCA1-223	ENST00000494123	RP1L1	Q8IWN7	2480 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	FIGNL2	A6NMB9	653 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123		J3KTA2	159 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF208	O43345	1280 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	SEMG1	P04279	462 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	GPI	P06744	558 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	NQO1	P15559	274 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	ST3GAL3	Q11203	375 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	FOXD4	Q12950	439 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	SF3B4	Q15427	424 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	ESPNL	Q6ZVH7	1005 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	GDF7	Q7Z4P5	450 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	GGN	Q86UU5	652 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	C7orf34	Q96L11	122 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR5B2	Q96R09	309 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	IL1RAP	Q9NPH3	570 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	NDUFAF4	Q9P032	175 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	RHCG	Q9UBD6	479 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	SH3BGRL2	Q9UJC5	107 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	RIMS3	Q9UJD0	308 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	OSGIN2	Q9Y236	505 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF835	Q9Y2P0	537 aa		13.11	□□□□□ -0.31
BRCA1-223	ENST00000494123	TRGV8	A0A0C4DH27	118 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		A8MVM7	634 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TNFSF11	O14788	317 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	WDR1	O75083	606 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	SEMA7A	O75326	666 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	RAP2A	P10114	183 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	THRB	P10828	461 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	HOXB6	P17509	224 aa	Known RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	RHCE	P18577	417 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	SHC1	P29353	583 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	EIF1AX	P47813	144 aa	Known RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	CLK1	P49759	484 aa	Known RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	SUCLG1	P53597	346 aa	Known RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	SGCB	Q16585	318 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	HBM	Q6B0K9	141 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR2V1	Q8NHB1	315 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	CANT1	Q8WVQ1	401 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	MPP4	Q96JB8	637 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	OR11A1	Q9GZK7	315 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TP63	Q9H3D4	680 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	A4GNT	Q9UNA3	340 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	ZNF462	Q96JM2	2506 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A087WUJ7	227 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A0J9YW62	118 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		A0A1W2PNR3	127 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TCRBV3S1	A0A5B6	114 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	AHRR	A9YTQ3	701 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		H0YC42	278 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	DIRAS1	O95057	198 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	GABRA1	P14867	456 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	GNLY	P22749	145 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TPD52	P55327	224 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	CLDN15	P56746	228 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	PPP4R4	Q6NUP7	873 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	TTC33	Q6PID6	262 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123		Q6ZPB1	254 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	ADGRG5	Q8IZF4	528 aa		13.1	□□□□□ -0.31
BRCA1-223	ENST00000494123	OFCC1	Q8IZS5	231 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms