RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TCP10LQ8TDR4 215 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SSC4DQ8WTU2 575 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 YIPF5Q969M3 257 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TESCQ96BS2 214 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MSANTD3Q96H12 275 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM80Q96HE8 168 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 LINC00615Q96LM1 132 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF578Q96N58 590 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF285Q96NJ3 590 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SERPINB12Q96P63 405 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC3BQ96PB8 259 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IL12RB2Q99665 862 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CCM2Q9BSQ5 444 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CHCHD5Q9BSY4 110 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RPP25Q9BUL9 199 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLC25A23Q9BV35 468 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IDI2Q9BXS1 227 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 GON7Q9BXV9 100 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PARD6GQ9BYG4 376 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ACTR6Q9GZN1 396 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 LSG1Q9H089 658 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DPH5Q9H2P9 285 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 OR51B6Q9H340 312 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DHX33Q9H6R0 707 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RANBP3Q9H6Z4 567 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DCLRE1BQ9H816 532 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A7Q9HAW7 530 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A10Q9HAW8 530 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A8Q9HAW9 530 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TMBIM4Q9HC24 238 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TM9SF3Q9HD45 589 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IFT46Q9NQC8 304 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 STAU2Q9NUL3 570 aaKnown RBP eCLIP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 COA4Q9NYJ1 87 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 AKAP7Q9P0M2 348 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PSMC3IPQ9P2W1 217 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 EXTL2Q9UBQ6 330 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RARRES3Q9UL19 164 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NDRG2Q9UN36 371 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ACOT9Q9Y305 439 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PRELID3BQ9Y3B1 194 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT2A1Q9Y4X1 527 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CSAG2Q9Y5P2 127 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 KLF2Q9Y5W3 355 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NRCAMQ92823 1304 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MYO10Q9HD67 2058 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RP1L1Q8IWN7 2480 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 COL6A6A6NMZ7 2263 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ATP8B3O60423 1300 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CLUHO75153 1309 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 UBE4BO95155 1302 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MROH5Q6ZUA9 1318 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ADGRA3Q8IWK6 1321 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 A0A0G2JMP0 313 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 A0A0X1KG70 313 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 LOC100653049A0A140TA62 436 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GSAPA4D1B5 854 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FAM149AA5PLN7 773 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 URADA6NGE7 173 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 A8MVM7 634 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 A8MXE2 369 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 F8VP50 259 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 J3QRK9 145 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 L7N2F9 121 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KPNA4O00629 521 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CDX4O14627 284 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ANGPT2O15123 496 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SCAMP2O15127 329 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SLC31A2O15432 143 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SPRY1O43609 319 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 BCAS1O75363 584 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CSDE1O75534 798 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PRDM1O75626 825 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GPX5O75715 221 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CBR3O75828 277 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KRT34O76011 436 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RHOBTB1O94844 696 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CDK14O94921 469 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSMG1O95456 288 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 DIRAS3O95661 229 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RAB3DO95716 219 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EPOP01588 193 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MBP02144 154 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 APOA1P02647 267 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SERPING1P05155 500 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPLP0P05388 317 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 YES1P07947 543 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FGF4P08620 206 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ODC1P11926 461 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MLNP12872 115 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NR2C1P13056 603 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 IFI30P13284 250 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC130P13994 396 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FDPSP14324 419 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CCNB1P14635 433 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GNSP15586 552 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF18P17022 549 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NELFEP18615 380 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TNNI3P19429 210 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms