RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LILRA1O75019 489 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 MRPL33O75394 65 aaKnown RBP13.37□□□□□ -0.27
MCF2L-228ENST00000487354 CRCPO75575 148 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 UGT2B17O75795 530 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 VENTXO95231 258 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 TACSTD2P09758 323 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 BMP4P12644 408 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 EGR1P18146 543 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 CASQ1P31415 396 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 CCT3P49368 545 aaKnown RBP13.37□□□□□ -0.27
MCF2L-228ENST00000487354 RPS26P62854 115 aaKnown RBP13.37□□□□□ -0.27
MCF2L-228ENST00000487354 MAPK14Q16539 360 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 FAM174BQ3ZCQ3 159 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 TSPO2Q5TGU0 170 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 KANK2Q63ZY3 851 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 SYT10Q6XYQ8 523 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 NOA1Q8NC60 698 aaKnown RBP13.37□□□□□ -0.27
MCF2L-228ENST00000487354 OR56A1Q8NGH5 318 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 PIGXQ8TBF5 258 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 CCDC126Q96EE4 140 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 MYOZ1Q9NP98 299 aaPredicted RBP13.37□□□□□ -0.27
MCF2L-228ENST00000487354 CHRNA9Q9UGM1 479 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 DNAJC15Q9Y5T4 150 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 FLVCR1Q9Y5Y0 555 aa13.37□□□□□ -0.27
MCF2L-228ENST00000487354 A0A1W2PPM1 405 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 GPR171O14626 319 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 DNPH1O43598 174 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 STAMBPO95630 424 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 C6orf47O95873 294 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 IGFBP1P08833 259 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-228ENST00000487354 LINC00032P0C843 101 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 UBTFL6P0CB48 400 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-228ENST00000487354 NEFHP12036 1026 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 GIFP27352 417 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 PGM1P36871 562 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 NAA20P61599 178 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 ETF1P62495 437 aaKnown RBP13.36□□□□□ -0.27
MCF2L-228ENST00000487354 ADIPOQQ15848 244 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 CARTPTQ16568 116 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 CASP12Q6UXS9 341 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 OR5AK3PQ8NH89 298 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 SFXN5Q8TD22 340 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 IFT81Q8WYA0 676 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 OR5P2Q8WZ92 322 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 BOD1Q96IK1 185 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 ZNF350Q9GZX5 532 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 TSPYL1Q9H0U9 437 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 GRPEL1Q9HAV7 217 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 OXSMQ9NWU1 459 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 TMED5Q9Y3A6 229 aa13.36□□□□□ -0.27
MCF2L-228ENST00000487354 TMEM233B4DJY2 109 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 AZIN1O14977 448 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 PLIN3O60664 434 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 CYP7B1O75881 506 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 SNRPD2P62316 118 aaKnown RBP13.35□□□□□ -0.27
MCF2L-228ENST00000487354 PTGR1Q14914 329 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 GPR68Q15743 365 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 EFNB3Q15768 340 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 UGT3A2Q3SY77 523 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 GALNTL6Q49A17 601 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 IQCCQ4KMZ1 466 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 HIKESHIQ53FT3 197 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 EMBQ6PCB8 327 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 C12orf54Q6X4T0 127 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 R3HCC1LQ7Z5L2 792 aaKnown RBP13.35□□□□□ -0.27
MCF2L-228ENST00000487354 ADGRG3Q86Y34 549 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 ZIC4Q8N9L1 334 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 BHLHE41Q9C0J9 482 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-228ENST00000487354 PLK3Q9H4B4 646 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 SEC61A2Q9H9S3 476 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 SERINC1Q9NRX5 453 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 CA10Q9NS85 328 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 TMEFF2Q9UIK5 374 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-228ENST00000487354 MKLN1Q9UL63 735 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 FAF1Q9UNN5 650 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-228ENST00000487354 FIS1Q9Y3D6 152 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 HDGFL3Q9Y3E1 203 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 TGP01266 2768 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 TRRAPQ9Y4A5 3859 aa13.35□□□□□ -0.27
MCF2L-228ENST00000487354 RIPK2O43353 540 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 GLRA3O75311 464 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 CSTAP01040 98 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 KRT16P08779 473 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 TFPIP10646 304 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 IMPDH2P12268 514 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 PGCP20142 388 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 SERPINF1P36955 418 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 HPCAL1P37235 193 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 APOBEC1P41238 236 aaKnown RBP13.34□□□□□ -0.27
MCF2L-228ENST00000487354 COMPP49747 757 aaPredicted RBP13.34□□□□□ -0.27
MCF2L-228ENST00000487354 PPOXP50336 477 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 CDH15P55291 814 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 FUT5Q11128 374 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 SLC17A1Q14916 467 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 TRIP10Q15642 601 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 AP1ARQ63HQ0 302 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 SLC46A3Q7Z3Q1 461 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 CLEC4FQ8N1N0 589 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 KRTCAP2Q8N6L1 136 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 TMEM234Q8WY98 164 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms