RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ANKRD42Q8N9B4 389 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF563Q8TA94 476 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 PIWIL2Q8TC59 973 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CNOT9Q92600 299 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 NEUROG1Q92886 237 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 DNAJA3Q96EY1 480 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 PANX1Q96RD7 426 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 PAIP2Q9BPZ3 127 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 USB1Q9BQ65 265 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 OR11A1Q9GZK7 315 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 LAMP3Q9UQV4 416 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 COL6A5A8TX70 2615 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 FBN1P35555 2871 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 DPRXA6NFQ7 191 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 CCDC154A6NI56 674 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 AGAP5A6NIR3 686 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 AP3D1O14617 1153 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 PMS2P2O95744 297 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 SOD3P08294 240 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 DANCRP0C864 163 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 TFPIP10646 304 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 RPS4Y1P22090 263 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF672Q499Z4 452 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 COX20Q5RI15 118 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 SPATA19Q7Z5L4 167 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 GALNT5Q7Z7M9 940 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 MTDHQ86UE4 582 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 ADGRG3Q86Y34 549 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 ARFGAP2Q8N6H7 521 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 KBTBD8Q8NFY9 601 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 FBXW5Q969U6 566 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 TRNT1Q96Q11 434 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 OR52E6Q96RD3 313 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 WDR55Q9H6Y2 383 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 NGBQ9NPG2 151 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 EMC3Q9P0I2 261 aa16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 SPIN1Q9Y657 262 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-206ENST00000473405 CUBNO60494 3623 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 CR1P17927 2039 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 ANK3Q12955 4377 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 GOLGA8QA0A0J9YX86 632 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 TMEM120BA0PK00 339 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 GOLGA8OA6NCC3 632 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 GOLGA8NF8WBI6 632 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 OVOL3O00110 214 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 HDAC3O15379 428 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 NTF4P34130 210 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 ATP5J2P56134 94 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 RPS4XP62701 263 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 PDK3Q15120 406 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 MAPK11Q15759 364 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 STK11Q15831 433 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 HHATQ5VTY9 493 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 CMIPQ8IY22 773 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 TRIML2Q8N7C3 387 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 PNPT1Q8TCS8 783 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 TRIM2Q9C040 744 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 SLC6A13Q9NSD5 602 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 NPAP1Q9NZP6 1156 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 LIPT1Q9Y234 373 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 HDGFL3Q9Y3E1 203 aa16.6■□□□□ 0.25
CCDC88B-206ENST00000473405 DNPH1O43598 174 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 RAMP1O60894 148 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 GSNP06396 782 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 IDH2P48735 452 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 SLC16A1P53985 500 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 TXNL4AP83876 142 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 H3F3AP84243 136 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 PPA1Q15181 289 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 LRRC74BQ6ZQY2 392 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 CROCCP2Q86T23 111 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF100Q8IYN0 542 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF433Q8N7K0 673 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 THAP1Q9NVV9 213 aa16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 MAGED1Q9Y5V3 778 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-206ENST00000473405 TRPC5OSA6NMA1 111 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 PGM3O95394 542 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 IGHV3-9P01782 118 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 GGT1P19440 569 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 CCNA2P20248 432 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 FKBP2P26885 142 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 CLK1P49759 484 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 MVDP53602 400 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 LRRC74AQ0VAA2 488 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 PGGHGQ32M88 737 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 TIMM23BQ5SRD1 257 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 FBXW9Q5XUX1 488 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 DNAJC14Q6Y2X3 702 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 ZNF621Q6ZSS3 439 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 MAVSQ7Z434 540 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 CCDC103Q8IW40 242 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 PIGXQ8TBF5 258 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 MGARPQ8TDB4 240 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 SMAP2Q8WU79 429 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 WDR60Q8WVS4 1066 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 APH1AQ96BI3 265 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 ZHX1-C8orf76Q96EF9 292 aa16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 MAELQ96JY0 434 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-206ENST00000473405 OSGIN1Q9UJX0 560 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms