RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 EXOSC1Q9Y3B2 195 aaKnown RBP16.72■□□□□ 0.27
COL9A3-205ENST00000466192 NTN3O00634 580 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-205ENST00000466192 TSPAN2O60636 221 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 CD79BP40259 229 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 COPZ1P61923 177 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 FHL1Q13642 323 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 FCRLBQ6BAA4 426 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 LCN10Q6JVE6 187 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 RPL13AP3Q6NVV1 102 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 NCCRP1Q6ZVX7 275 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-205ENST00000466192 ANKRD37Q7Z713 158 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 OAFQ86UD1 273 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 ZNF441Q8N8Z8 693 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 OR9Q1Q8NGQ5 310 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 DNAJA4Q8WW22 397 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-205ENST00000466192 TM9SF4Q92544 642 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 C3orf49Q96BT1 292 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 RERGLQ9H628 205 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 CCDC59Q9P031 241 aaKnown RBP16.72■□□□□ 0.27
COL9A3-205ENST00000466192 SEC14L4Q9UDX3 406 aa16.72■□□□□ 0.27
COL9A3-205ENST00000466192 A0A087WUJ7 227 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TMEM129A0AVI4 362 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 OR6C76A6NM76 312 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 HEXBP07686 556 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 SP9P0CG40 484 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 IL12BP29460 328 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 DUSP3P51452 185 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-205ENST00000466192 FOXK2Q01167 660 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ATP1A4Q13733 1029 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TCEAL6Q6IPX3 200 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 OVCH1Q7RTY7 1134 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ATOH1Q92858 354 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TCEAL3Q969E4 200 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TMEM203Q969S6 136 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 DACH2Q96NX9 599 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TNFRSF13CQ96RJ3 184 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 STUB1Q9UNE7 303 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 B3GNT3Q9Y2A9 372 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ZC3H12DA2A288 527 aaKnown RBP16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ZNF264O43296 627 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 HCN1O60741 890 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ONECUT2O95948 504 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 TSPAN19P0C672 248 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 CPEP16870 476 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ZNF12P17014 697 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ABCD3P28288 659 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 SLC1A3P43003 542 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 CCR4P51679 360 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 ZNF524Q96C55 264 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 OMA1Q96E52 524 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 COX4I2Q96KJ9 171 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 KLHDC3Q9BQ90 382 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 HCAR1Q9BXC0 346 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 EXOSC3Q9NQT5 275 aaKnown RBP16.71■□□□□ 0.27
COL9A3-205ENST00000466192 INIPQ9NRY2 104 aa16.71■□□□□ 0.27
COL9A3-205ENST00000466192 GTPBP1O00178 669 aaKnown RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 ALOX12BO75342 701 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 SOX6P35712 828 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 PLCXD2Q0VAA5 305 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 CLPPQ16740 277 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 OR51G2Q8NGK0 314 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 SECISBP2Q96T21 854 aaKnown RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 ASPNQ9BXN1 380 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 NXF2Q9GZY0 626 aaKnown RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 AKIRIN1Q9H9L7 192 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 ICAM5Q9UMF0 924 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 FAM86C2PA6NEL3 165 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 VSTM2BA6NLU5 285 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 LRRTM2O43300 516 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 FGF5P12034 268 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 MST1P26927 711 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 WBP2NLQ6ICG8 309 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 NIPAL3Q6P499 406 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 GID4Q8IVV7 300 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 SIRT6Q8N6T7 355 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 APCDD1LQ8NCL9 501 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 NFAM1Q8NET5 270 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 MCCC2Q9HCC0 563 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 CMC2Q9NRP2 79 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 SSR3Q9UNL2 185 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 EXOGQ9Y2C4 368 aaKnown RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 YARS2Q9Y2Z4 477 aaKnown RBP16.7■□□□□ 0.26
COL9A3-205ENST00000466192 A3GALT2U3KPV4 340 aa16.7■□□□□ 0.26
COL9A3-205ENST00000466192 RALGAPA1Q6GYQ0 2036 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 C17orf51A8MQB3 221 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 LRRN3E7EW58 273 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 SULT1C4O75897 302 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 PPP1R3DO95685 299 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 LCN1P31025 176 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 RPS19P39019 145 aaKnown RBP16.69■□□□□ 0.26
COL9A3-205ENST00000466192 RNF4P78317 190 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 RGS21Q2M5E4 152 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 KLHL12Q53G59 568 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 GDPGP1Q6ZNW5 385 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 DCDC5Q6ZRR9 648 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 ZFP41Q8N8Y5 198 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 C17orf47Q8NEP4 570 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 SPSB2Q99619 263 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 ARHGAP9Q9BRR9 750 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 SEMA4CQ9C0C4 833 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms