RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 OR2B6P58173 313 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 COPZ1P61923 177 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 KCNJ10P78508 379 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 PPA1Q15181 289 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 SYT14P1Q58G82 188 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 OGFOD2Q6N063 350 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 TMEM108Q6UXF1 575 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 LRRC74BQ6ZQY2 392 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 NUFIP2Q7Z417 695 aaKnown RBP6.9□□□□□ -1.3
CD44-211ENST00000442151 PEX5LQ8IYB4 626 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 UBE2J2Q8N2K1 259 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 OR5D16Q8NGK9 328 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 OR5AK3PQ8NH89 298 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 ABHD3Q8WU67 409 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 SMAP2Q8WU79 429 aaPredicted RBP6.9□□□□□ -1.3
CD44-211ENST00000442151 APH1AQ96BI3 265 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 S100PBPQ96BU1 408 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 OTUB1Q96FW1 271 aaPredicted RBP6.9□□□□□ -1.3
CD44-211ENST00000442151 PANX1Q96RD7 426 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 PAIP2Q9BPZ3 127 aaKnown RBP6.9□□□□□ -1.3
CD44-211ENST00000442151 THAP1Q9NVV9 213 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 NKIRAS1Q9NYS0 192 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 TMEM181Q9P2C4 612 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 UPB1Q9UBR1 384 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 CHRNA9Q9UGM1 479 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 HAO1Q9UJM8 370 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 MKLN1Q9UL63 735 aa6.9□□□□□ -1.3
CD44-211ENST00000442151 IGKV3D-15A0A087WSY6 115 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 NPIPA5A0A0B4J1W7 369 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 CCDC154A6NI56 674 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 CCT8L1PA6NM43 557 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 NPIPA7E9PJI5 369 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 FAAHO00519 579 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 CLOCKO15516 846 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 KIAA0513O60268 411 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ERLIN1O75477 346 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 GCM2O75603 506 aaPredicted RBP6.9□□□□□ -1.31
CD44-211ENST00000442151 ANP32DO95626 131 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 UBTFL6P0CB48 400 aaPredicted RBP6.9□□□□□ -1.31
CD44-211ENST00000442151 NPIPA8P0DM63 369 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 NR2F1P10589 423 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 IL7RP16871 459 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 PTAFRP25105 342 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 LOXP28300 417 aaPredicted RBP6.9□□□□□ -1.31
CD44-211ENST00000442151 CCKARP32238 428 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 DIO1P49895 249 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 IRX1P78414 480 aaPredicted RBP6.9□□□□□ -1.31
CD44-211ENST00000442151 CHRNB3Q05901 458 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 SKP2Q13309 424 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 CASP8Q14790 479 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ZNF672Q499Z4 452 aaPredicted RBP6.9□□□□□ -1.31
CD44-211ENST00000442151 CEP85LQ5SZL2 805 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 FBXW9Q5XUX1 488 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 SAXO2Q658L1 398 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ALKBH2Q6NS38 261 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ZNF621Q6ZSS3 439 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ZNF781Q8N8C0 355 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 HS6ST2Q96MM7 605 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 CCDC115Q96NT0 180 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 OR52E6Q96RD3 313 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 PSD2Q9BQI7 771 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 SLC35A5Q9BS91 424 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 SRXN1Q9BYN0 137 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 FKRPQ9H9S5 495 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 MEAF6Q9HAF1 191 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 ASB6Q9NWX5 421 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 SLC9A8Q9Y2E8 581 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 KCNE3Q9Y6H6 103 aa6.9□□□□□ -1.31
CD44-211ENST00000442151 NAV3Q8IVL0 2385 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 DCHS2Q6V1P9 2916 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 A0A096LPI6 279 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 A0A1W2PNR3 127 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 A0A1W2PPR1 153 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 HDAC3O15379 428 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 OIP5O43482 229 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 EFNA2O43921 213 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 PGM3O95394 542 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 LY6G6DO95868 133 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 WNT11O96014 354 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 DHRS4L1P0CG22 281 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 IDO1P14902 403 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 CXCR1P25024 350 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 PGM1P36871 562 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 SLC18A1P54219 525 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 LARS2Q15031 903 aaKnown RBP6.89□□□□□ -1.31
CD44-211ENST00000442151 TAB1Q15750 504 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 STK11Q15831 433 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 CLEC12BQ2HXU8 276 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.89□□□□□ -1.31
CD44-211ENST00000442151 TYW3Q6IPR3 259 aaKnown RBP6.89□□□□□ -1.31
CD44-211ENST00000442151 KLHL24Q6TFL4 600 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 MSANTD1Q6ZTZ1 278 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 CLECL1Q8IZS7 167 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 FBXL14Q8N1E6 418 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 LRRN4CLQ8ND94 238 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 WDR60Q8WVS4 1066 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 RHNO1Q9BSD3 238 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 SF3B5Q9BWJ5 86 aaKnown RBP6.89□□□□□ -1.31
CD44-211ENST00000442151 TAPBPLQ9BX59 468 aa6.89□□□□□ -1.31
CD44-211ENST00000442151 PARD6BQ9BYG5 372 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms