RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PIGXQ8TBF5 258 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 HTRA1Q92743 480 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 ROPN1LQ96C74 230 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 ARL5BQ96KC2 179 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 ADAD1Q96M93 576 aaKnown RBP12.8□□□□□ -0.36
SDC1-204ENST00000429035 SLC35A5Q9BS91 424 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 ASIC5Q9NY37 505 aa12.8□□□□□ -0.36
SDC1-204ENST00000429035 MARCOQ9UEW3 520 aaPredicted RBP12.8□□□□□ -0.36
SDC1-204ENST00000429035 ANK3Q12955 4377 aaKnown RBP12.8□□□□□ -0.36
SDC1-204ENST00000429035 ANKRD28O15084 1053 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 CD5LO43866 347 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 MRPL33O75394 65 aaKnown RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 CD8AP01732 235 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 SERPINE1P05121 402 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 DHRS4L1P0CG22 281 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 APOBEC1P41238 236 aaKnown RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 ABCE1P61221 599 aaKnown RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 NRF1Q16656 503 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 KRT71Q3SY84 523 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 SPANXN4Q5MJ08 99 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 ANXA8L1Q5VT79 327 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 FBXW9Q5XUX1 488 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 HMBOX1Q6NT76 420 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 EMBQ6PCB8 327 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 CLEC2AQ6UVW9 174 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 DTX2Q86UW9 622 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 FBXL14Q8N1E6 418 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 FAM71CQ8NEG0 241 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 VPS37AQ8NEZ2 397 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 OR8J2Q8NGG1 315 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 OR52E4Q8NGH9 312 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 ZBTB9Q96C00 473 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 RHNO1Q9BSD3 238 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 CCDC106Q9BWC9 280 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 C1QTNF6Q9BXI9 259 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 NUF2Q9BZD4 464 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 ROPN1BQ9BZX4 212 aaPredicted RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 ROPN1Q9HAT0 212 aaPredicted RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.79□□□□□ -0.36
SDC1-204ENST00000429035 ASB6Q9NWX5 421 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 TAS2R16Q9NYV7 291 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 UPB1Q9UBR1 384 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 B3GALT5Q9Y2C3 310 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 HDGFL3Q9Y3E1 203 aa12.79□□□□□ -0.36
SDC1-204ENST00000429035 IGHV4-30-2A0A087WSY4 118 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 IGKV3D-15A0A087WSY6 115 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 ZNF716A6NP11 495 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 AP3D1O14617 1153 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 TYROBPO43914 113 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 PMS2P2O95744 297 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 MYZAPP0CAP1 466 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 ETV4P43268 484 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 MAGEA8P43361 318 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 IDH2P48735 452 aaKnown RBP12.78□□□□□ -0.36
SDC1-204ENST00000429035 FABP6P51161 128 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 IRX1P78414 480 aaPredicted RBP12.78□□□□□ -0.36
SDC1-204ENST00000429035 FAM174BQ3ZCQ3 159 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 SAXO2Q658L1 398 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 B3GLCTQ6Y288 498 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 P2RY8Q86VZ1 359 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 CCDC103Q8IW40 242 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 DEPDC4Q8N2C3 294 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 MIPOL1Q8TD10 442 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 POLE3Q9NRF9 147 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 MGAT4BQ9UQ53 548 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 ATP23Q9Y6H3 246 aa12.78□□□□□ -0.36
SDC1-204ENST00000429035 TMED7-TICAM2A0A0A6YYA0 188 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 PRSS51A0A1B0GVH4 220 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 RNF212BA8MTL3 300 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 E7EQL1 145 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 E9PBE3 544 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 GPR171O14626 319 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 RGS16O15492 202 aaPredicted RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 TLX2O43763 284 aaPredicted RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 DNAJA2O60884 412 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 PGM3O95394 542 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 PTAFRP25105 342 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 CD40P25942 277 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 S100A3P33764 101 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 CLNS1AP54105 237 aaKnown RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 FOXG1P55316 489 aaPredicted RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 KCNJ10P78508 379 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 PDK3Q15120 406 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 SMU1Q2TAY7 513 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 DNAJC14Q6Y2X3 702 aaPredicted RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 SSX8Q7RTT4 187 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 RNF130Q86XS8 419 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 MUC15Q8N387 334 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 ANKFN1Q8N957 763 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 PNPT1Q8TCS8 783 aaKnown RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 WDR60Q8WVS4 1066 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 CNOT9Q92600 299 aaKnown RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 DDIT4LQ96D03 193 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 NEURL3Q96EH8 262 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 RADILQ96JH8 1075 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 ZIM3Q96PE6 472 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 DHRS9Q9BPW9 319 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 CENPHQ9H3R5 247 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 CBLN4Q9NTU7 201 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms