RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SGTBQ96EQ0 304 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ZPBPQ9BS86 351 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 GALNT9Q9HCQ5 603 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 HINT3Q9NQE9 182 aaKnown RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PADI1Q9ULC6 663 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 AHCTF1Q8WYP5 2266 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 C2orf72A6NCS6 295 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 M0R082 166 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 TNFRSF10AO00220 468 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PLD2O14939 933 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PRODHO43272 600 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 HCN1O60741 890 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PNMTP11086 282 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PSMB9P28065 219 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 FOLR3P41439 243 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ST13P50502 369 aaKnown RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF362Q5T0B9 420 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 SLC35F1Q5T1Q4 408 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 RPL13AP3Q6NVV1 102 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 C6orf15Q6UXA7 325 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 OR52L1Q8NGH7 329 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF563Q8TA94 476 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 GPR119Q8TDV5 335 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 CT55Q8WUE5 264 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 YIPF6Q96EC8 236 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 CCNL2Q96S94 520 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 TMEM43Q9BTV4 400 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 DEFB126Q9BYW3 111 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PRRG3Q9BZD7 231 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 SLC19A3Q9BZV2 496 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 MED17Q9NVC6 651 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 WARS2Q9UGM6 360 aaKnown RBP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.56□□□□□ -0.4
PTPRF-202ENST00000372405 PCDHGA1Q9Y5H4 931 aa12.56□□□□□ -0.4
PTPRF-202ENST00000372405 A0A1W2PQ72 361 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 HMGN1P05114 100 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 NAGAP17050 411 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 BMP7P18075 431 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 ITPKBP27987 946 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 GRK5P34947 590 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 P2RX1P51575 399 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 TMBIM6P55061 237 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 FOXK2Q01167 660 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 GXYLT1Q4G148 440 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 HES3Q5TGS1 186 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 OR5M10Q6IEU7 315 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 MOGAT1Q96PD6 335 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 RASL10BQ96S79 203 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 IFT27Q9BW83 186 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 CLEC2DQ9UHP7 191 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 OSGIN1Q9UJX0 560 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 TCFL5Q9UL49 500 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 PCDHGA3Q9Y5H0 932 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 DMXL1Q9Y485 3027 aa12.55□□□□□ -0.4
PTPRF-202ENST00000372405 CCDC187A0A096LP49 1063 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 FAM183AA6NL82 134 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TRMUO75648 421 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 OR7A10O76100 309 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 APOL3O95236 402 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 FBXO45P0C2W1 286 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TCN2P20062 427 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ENDOUP21128 410 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 NR4A1P22736 598 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TGFBR2P37173 567 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 LIPAP38571 399 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PTGDSP41222 190 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 RPS4XP62701 263 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 LTBQ06643 244 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CBFBQ13951 182 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TRIP6Q15654 476 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 COL28A1Q2UY09 1125 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 FCRLBQ6BAA4 426 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PPP1R32Q7Z5V6 425 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ANKRD13BQ86YJ7 626 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CPOQ8IVL8 374 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 OR10G3Q8NGC4 313 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 OR52I1Q8NGK6 324 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 B4GALNT2Q8NHY0 566 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 FCGR1BQ92637 280 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 LGALS12Q96DT0 336 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 KTI12Q96EK9 354 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 OR5M11Q96RB7 305 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 NPAS1Q99742 590 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TAPBPLQ9BX59 468 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 HCAR1Q9BXC0 346 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 C12orf10Q9HB07 376 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 MRPS18AQ9NVS2 196 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ENPP5Q9UJA9 477 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF292O60281 2723 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 MCIDASD6RGH6 385 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PPP1R3DO95685 299 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 NUDT14O95848 222 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 IGF2P01344 180 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PGCP20142 388 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CCNA2P20248 432 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 AQP6Q13520 282 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 QPRTQ15274 297 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF74Q16587 644 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CTF1Q16619 201 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PAQR6Q6TCH4 344 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms