RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ACSS1Q9NUB1 689 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 GFOD1Q9NXC2 390 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 H0YIV9 168 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 TNFSF12O43508 249 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CLEC3AO75596 197 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 OR8G3PP0DMU2 310 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 ELAVL4P26378 380 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CLDN6P56747 220 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 SIRPAP78324 504 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 GPLD1P80108 840 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 OR1Q1Q15612 314 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 DCST2Q5T1A1 773 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 PGAP1Q75T13 922 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 PGBD5Q8N414 524 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC25A46Q96AG3 418 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CACNA1CQ13936 2221 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 LAMA4Q16363 1823 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 GPX5O75715 221 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 PNMTP11086 282 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CRABP1P29762 137 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CTHP32929 405 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 DUSP6Q16828 381 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF695Q8IW36 515 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 UQCC2Q9BRT2 126 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 CNTNAP3Q9BZ76 1288 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 HOXD1Q9GZZ0 328 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 AKIP1Q9NQ31 210 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 NOX1Q9Y5S8 564 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 PIGBOS1A0A0B4J2F0 54 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 OR6C6A6NF89 314 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 OR52A4PA6NMU1 304 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 SSX2Q16385 188 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 XKR7Q5GH72 579 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 SDHAF2Q9NX18 166 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 NHSQ6T4R5 1651 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 IFNGR1P15260 489 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 JUNDP17535 347 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 RAB3AP20336 220 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 GPR176Q14439 515 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 UNQ6126/PRO20091Q6UXV3 157 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 PLEKHJ1Q9NW61 149 aa18.24■□□□□ 0.51
CCDC88B-202ENST00000356786 DPM1O60762 260 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 HIST1H1TP22492 207 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ARNTP27540 789 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC14A2Q15849 920 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 GAREM2Q75VX8 874 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ST8SIA4Q92187 359 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 KLHDC7BQ96G42 594 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 PUS1Q9Y606 427 aaKnown RBP eCLIP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 AFF3P51826 1226 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 PDSS1Q5T2R2 415 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM244Q5VVB8 128 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SULF2Q8IWU5 870 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ADGRF3Q8IZF5 1079 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 L3MBTL4Q8NA19 623 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC39A13Q96H72 371 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 BMFQ96LC9 184 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 NRIP3Q9NQ35 241 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 C19orf25Q9UFG5 118 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SOCS6O14544 535 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF888P0CJ79 500 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 GPM6BQ13491 265 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC22A6Q4U2R8 563 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 NXNL2Q5VZ03 156 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 PAPD4Q6PIY7 484 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SERINC2Q96SA4 455 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 NELFAQ9H3P2 528 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 PDE7BQ9NP56 450 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 RNGTTO60942 597 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF780AO75290 641 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 HEXBP07686 556 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 CR2P20023 1033 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 THBS2P35442 1172 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SRP9P49458 86 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF611Q8N823 705 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SCARB1Q8WTV0 552 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 OR14A2Q96R54 314 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ZFYVE21Q9BQ24 234 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 C20orf85Q9H1P6 137 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 INIPQ9NRY2 104 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 FAM86C1Q9NVL1 165 aa18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF443Q9Y2A4 671 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC22A23A1A5C7 686 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 C1orf105O95561 183 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF865P0CJ78 1059 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 GZMKP49863 264 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 CCR9P51686 369 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 DEFB110Q30KQ9 67 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 OR7E24Q6IFN5 339 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 GPR155Q7Z3F1 870 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 MRPL10Q7Z7H8 261 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 OR6F1Q8NGZ6 308 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 NICN1Q9BSH3 213 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 RLIMQ9NVW2 624 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 OR5K4A6NMS3 321 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 B4DXG7 233 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 ATP1B1P05026 303 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 KLK3P07288 261 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 SUOXP51687 545 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms