RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 OR52A5Q9H2C5 316 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 GHITMQ9H3K2 345 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SLC6A20Q9NP91 592 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 SLC22A11Q9NSA0 550 aa10.13□□□□□ -0.79
LSM3-201ENST00000306024 GPN3Q9UHW5 284 aaPredicted RBP10.13□□□□□ -0.79
LSM3-201ENST00000306024 FAAHO00519 579 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PRMT3O60678 531 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 NMBP08949 121 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 ALPPL2P10696 532 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PCSK2P16519 638 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 RBMS1P29558 406 aaKnown RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 PPP2R1BP30154 601 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SOX18P35713 384 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 TMUB2Q71RG4 321 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 BTN2A1Q7KYR7 527 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 OR51G2Q8NGK0 314 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 CHTF18Q8WVB6 975 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PATE1Q8WXA2 126 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PITHD1Q9GZP4 211 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 HEXA-AS1Q9H8Q6 139 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SPHK1Q9NYA1 384 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 GPR160Q9UJ42 338 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 C1orf196B1AJZ1 125 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 WRBO00258 174 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 LCMT2O60294 686 aaKnown RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 RGS9O75916 674 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 SNAPC5O75971 98 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 NR2F1P10589 423 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 BCKDHBP21953 392 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PSMB5P28074 263 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SSR2P43308 183 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SELENOPP49908 381 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 INSL4Q14641 139 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 LIPJQ5W064 366 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 OR4F15Q8NGB8 312 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 WDR48Q8TAF3 677 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 ZNF607Q96SK3 696 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 C20orf85Q9H1P6 137 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 TCEAL2Q9H3H9 227 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 RCE1Q9Y256 329 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 AP1M2Q9Y6Q5 423 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 KIF26AQ9ULI4 1882 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 C7orf66A4D0T2 115 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 PRAF2O60831 178 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 HOXB1P14653 301 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 SRSF5Q13243 272 aaKnown RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 PLA1AQ53H76 456 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 OR5M10Q6IEU7 315 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SSX6Q7RTT6 188 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 FAM174AQ8TBP5 190 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 SETD7Q8WTS6 366 aaKnown RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 SPRYD4Q8WW59 207 aaPredicted RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 CMSS1Q9BQ75 279 aaKnown RBP10.12□□□□□ -0.79
LSM3-201ENST00000306024 IER2Q9BTL4 223 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 ASF1BQ9NVP2 202 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 TAS2R10Q9NYW0 307 aa10.12□□□□□ -0.79
LSM3-201ENST00000306024 C5orf42Q9H799 3197 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 DOCK9Q9BZ29 2069 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 SPTY2D1-AS1A0A0U1RR47 76 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 DAPL1A0PJW8 107 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 ZNF705EA8MWA4 302 aaPredicted RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 ZNF593O00488 134 aaPredicted RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 IGHV4-34P06331 123 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 EIF4EP06730 217 aaKnown RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 ZNF14P17017 642 aaPredicted RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 PFN3P60673 137 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 RPS13P62277 151 aaKnown RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 DGCR2P98153 550 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 ILKQ13418 452 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 COL9A2Q14055 689 aaPredicted RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 C4orf46Q504U0 113 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 COX20Q5RI15 118 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 LIN54Q6MZP7 749 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 CEACAM20Q6UY09 585 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 C1orf216Q8TAB5 229 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 XAGE5Q8WWM1 108 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 EDAQ92838 391 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 MKL2Q9ULH7 1088 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 LINC01387J3KSC0 135 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 M0R296 226 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 PRODHO43272 600 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 SHC1P29353 583 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 SEC61A1P61619 476 aaKnown RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 RAB40BQ12829 278 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 MPEG1Q2M385 716 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 LRRC37A5PQ49AS3 106 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 SLC27A4Q6P1M0 643 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 NXPE4Q6UWF7 544 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 AVL9Q8NBF6 648 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 CNOT9Q92600 299 aaKnown RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 RAB8BQ92930 207 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 ZNF582Q96NG8 517 aaPredicted RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 MNTQ99583 582 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 C7orf50Q9BRJ6 194 aaKnown RBP10.11□□□□□ -0.79
LSM3-201ENST00000306024 RHBGQ9H310 441 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 FTSJ1Q9UET6 329 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 NEUROG3Q9Y4Z2 214 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 CACNA1EQ15878 2313 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 TRABD2BA6NFA1 517 aa10.11□□□□□ -0.79
LSM3-201ENST00000306024 OR2AT4A6NND4 320 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms