RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 RAP2CQ9Y3L5 183 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 PLCE1Q9P212 2302 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 SONP18583 2426 aaKnown RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 PRSS51A0A1B0GVH4 220 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 A0A1W2PR80 420 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 E9PBE3 544 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 RGS16O15492 202 aaPredicted RBP11.26□□□□□ -0.61
CD44-203ENST00000278386 ADAM11O75078 769 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 NDUFS7O75251 213 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 CRLF1O75462 422 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 PMS2P2O95744 297 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 PTNP21246 168 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 ZNF83P51522 516 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 NUDT6P53370 316 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 OR2B6P58173 313 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 CHRNEQ04844 493 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 SPOCK1Q08629 439 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 SPANXN4Q5MJ08 99 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 AGAP6Q5VW22 663 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 FBXW9Q5XUX1 488 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 SLC22A25Q6T423 547 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 KLHL17Q6TDP4 642 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 TMEM108Q6UXF1 575 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 CASP12Q6UXS9 341 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 MTDHQ86UE4 582 aaKnown RBP11.26□□□□□ -0.61
CD44-203ENST00000278386 P2RY8Q86VZ1 359 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 OIT3Q8WWZ8 545 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 TESCQ96BS2 214 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 NEURL3Q96EH8 262 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 ARL5BQ96KC2 179 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 CCDC106Q9BWC9 280 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 NUF2Q9BZD4 464 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.26□□□□□ -0.61
CD44-203ENST00000278386 ASB6Q9NWX5 421 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 ADAM21Q9UKJ8 722 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 HDGFL3Q9Y3E1 203 aa11.26□□□□□ -0.61
CD44-203ENST00000278386 IGKV3D-15A0A087WSY6 115 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 CLDN24A6NM45 220 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 ZNF716A6NP11 495 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 M0R1B8 84 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 GPR171O14626 319 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 SSX4O60224 188 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 MRPL33O75394 65 aaKnown RBP11.25□□□□□ -0.61
CD44-203ENST00000278386 DHRS4L1P0CG22 281 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 LBPP18428 481 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 BGNP21810 368 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 S100A3P33764 101 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 MAGEA8P43361 318 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 SLC1A6P48664 564 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 RPL14P50914 215 aaKnown RBP11.25□□□□□ -0.61
CD44-203ENST00000278386 NME5P56597 212 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 PDK3Q15120 406 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 NRF1Q16656 503 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 FAM174BQ3ZCQ3 159 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 DTX2Q86UW9 622 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 KIRREL3Q8IZU9 778 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 WDR60Q8WVS4 1066 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 DDIT4LQ96D03 193 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 ADAD1Q96M93 576 aaKnown RBP11.25□□□□□ -0.61
CD44-203ENST00000278386 SORT1Q99523 831 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 CACNG6Q9BXT2 260 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 CENPHQ9H3R5 247 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 EXOSC3Q9NQT5 275 aaKnown RBP11.25□□□□□ -0.61
CD44-203ENST00000278386 YAE1D1Q9NRH1 226 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 TAS2R16Q9NYV7 291 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 MGAT4BQ9UQ53 548 aa11.25□□□□□ -0.61
CD44-203ENST00000278386 TMED7-TICAM2A0A0A6YYA0 188 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 AP3D1O14617 1153 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 TM9SF1O15321 606 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 BIRC5O15392 142 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 DNPH1O43598 174 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 SCN2BO60939 215 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 PGM3O95394 542 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 CD8AP01732 235 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 HTR3AP46098 478 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 IDH2P48735 452 aaKnown RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 ANXA11P50995 505 aaKnown RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 POLR2HP52434 150 aaKnown RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 PHC1P78364 1004 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 KCNJ10P78508 379 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 CASP8Q14790 479 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 C9orf135Q5VTT2 229 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 DNAJC14Q6Y2X3 702 aaPredicted RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 CXXC5Q7LFL8 322 aaKnown RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 LSRQ86X29 649 aaPredicted RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 RNF130Q86XS8 419 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 CCDC103Q8IW40 242 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 FBXL14Q8N1E6 418 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 TRIML2Q8N7C3 387 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 OR52E4Q8NGH9 312 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 RADILQ96JH8 1075 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 PAIP2Q9BPZ3 127 aaKnown RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 RHNO1Q9BSD3 238 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 SAP130Q9H0E3 1048 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 UPB1Q9UBR1 384 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 MALT1Q9UDY8 824 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-203ENST00000278386 B3GALT5Q9Y2C3 310 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 TMED7Q9Y3B3 224 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms