RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 OR11A1Q9GZK7 315 aa12.83□□□□□ -0.36
HMGN3-201ENST00000275036 SERINC1Q9NRX5 453 aa12.83□□□□□ -0.36
HMGN3-201ENST00000275036 CCDC167Q9P0B6 97 aa12.83□□□□□ -0.36
HMGN3-201ENST00000275036 CHRNA9Q9UGM1 479 aa12.83□□□□□ -0.36
HMGN3-201ENST00000275036 UQCRHLA0A096LP55 91 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 A0A096LPI6 279 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CDHR4A6H8M9 788 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CLIC1O00299 241 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 NR5A2O00482 541 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CYTIPO60759 359 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 GCM2O75603 506 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 FESP07332 822 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 YES1P07947 543 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CD99P14209 185 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CRISP3P54108 245 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 EPS8Q12929 822 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 KEAP1Q14145 624 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 TMEM201Q5SNT2 666 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 LRIF1Q5T3J3 769 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 BEND4Q6ZU67 534 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 CXorf67Q86X51 503 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 PEX5LQ8IYB4 626 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 WFDC11Q8NEX6 87 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 OR52P1PQ8NH57 321 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 SLC25A43Q8WUT9 341 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 MAL2Q969L2 176 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF775Q96BV0 537 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 SPDL1Q96EA4 605 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 PIK3IP1Q96FE7 263 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF300Q96RE9 604 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 RSPO3Q9BXY4 272 aaPredicted RBP12.82□□□□□ -0.36
HMGN3-201ENST00000275036 BCO1Q9HAY6 547 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 GP6Q9HCN6 339 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 DLL4Q9NR61 685 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 OSGIN1Q9UJX0 560 aa12.82□□□□□ -0.36
HMGN3-201ENST00000275036 TRBV5-3A0A0A0MS03 114 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 TMEM72A0PK05 275 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF814B7Z6K7 855 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 SULT2B1O00204 365 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 FAAHO00519 579 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 GKN3PP0CG01 181 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 TFPIP10646 304 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 BMP2P12643 396 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 CCNA2P20248 432 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ACAA2P42765 397 aaKnown RBP12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ATP4BP51164 291 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 RIPPLY3P57055 190 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 RASGEF1BQ0VAM2 473 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 TSC22D1Q15714 1073 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 AGKQ53H12 422 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 GABRG1Q8N1C3 465 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 SLC43A2Q8N370 569 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 CLIP4Q8N3C7 705 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 IKZF5Q9H5V7 419 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF385DQ9H6B1 395 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF446Q9NWS9 450 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF226Q9NYT6 803 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 CALML5Q9NZT1 146 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 VAPAQ9P0L0 249 aa12.81□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF443Q9Y2A4 671 aaPredicted RBP12.81□□□□□ -0.36
HMGN3-201ENST00000275036 TMED7-TICAM2A0A0A6YYA0 188 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 A0A0G2JPF8 293 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ZC3H12DA2A288 527 aaKnown RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 CFAP73A6NFT4 308 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HNRNPCL2B2RXH8 293 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HNRNPCL3B7ZW38 293 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 KLF4O43474 513 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HNRNPCL1O60812 293 aaKnown RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 EDF1O60869 148 aaKnown RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 RAMP1O60894 148 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 PMS2P2O95744 297 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HNRNPCL4P0DMR1 293 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 PRG2P13727 222 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 PSMB1P20618 241 aaKnown RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 TACR3P29371 465 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HOXC12P31275 282 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 SLC1A3P43003 542 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 CSNK2A1P68400 391 aaPredicted RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 FADDQ13158 208 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 GNA13Q14344 377 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 SQLEQ14534 574 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 LIN52Q52LA3 116 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 RNF220Q5VTB9 566 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ABLIM2Q6H8Q1 611 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 STK32CQ86UX6 486 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 STON2Q8WXE9 905 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ACTR6Q9GZN1 396 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ADAM19Q9H013 955 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 NPHS2Q9NP85 383 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 A4GALTQ9NPC4 353 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 KLHL9Q9P2J3 617 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 PRSS50Q9UI38 385 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 DCTN4Q9UJW0 460 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 TMED7Q9Y3B3 224 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 HDGFL3Q9Y3E1 203 aa12.8□□□□□ -0.36
HMGN3-201ENST00000275036 SPIN1Q9Y657 262 aaPredicted RBP12.8□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF716A6NP11 495 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF724A8MTY0 619 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 THBS1P07996 1170 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms