RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SOX3P41225 446 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 LIMK1P53667 647 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 GAS1P54826 345 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 CBFBQ13951 182 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SNAPC1Q16533 368 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 NTRK2Q16620 822 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 ELOA3BQ3SY89 546 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 BICRALQ6AI39 1079 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 AHSA2Q719I0 299 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 MISPQ8IVT2 679 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 ELOA3Q8NG57 546 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 BRIX1Q8TDN6 353 aaKnown RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 IPCEF1Q8WWN9 437 aaPredicted RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 CCDC90BQ9GZT6 254 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 ADAM19Q9H013 955 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 GALNT9Q9HCQ5 603 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 CLN6Q9NWW5 311 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 PSORS1C1Q9UIG5 152 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SIGLEC7Q9Y286 467 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SNX5Q9Y5X3 404 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 LOC101059948A0A1B0GTJ6 334 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 SMIM31A0A1B0GVY4 71 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 SH3D21A4FU49 640 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 C21orf140B9A014 251 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 TLX2O43763 284 aaPredicted RBP15.37■□□□□ 0.05
CLN3-252ENST00000636907 ENTPD6O75354 484 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 PTP4A3O75365 173 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 ST13P50502 369 aaKnown RBP15.37■□□□□ 0.05
CLN3-252ENST00000636907 EFNB1P98172 346 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 PMS2P3Q13401 168 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 NEDD8Q15843 81 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 COL28A1Q2UY09 1125 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 TMEM201Q5SNT2 666 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 FCRLBQ6BAA4 426 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 XAF1Q6GPH4 301 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 BCDIN3DQ7Z5W3 292 aaKnown RBP15.37■□□□□ 0.05
CLN3-252ENST00000636907 GPR119Q8TDV5 335 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 GGHQ92820 318 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 FGF11Q92914 225 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 SGTBQ96EQ0 304 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 GPR87Q9BY21 358 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 B3GNT4Q9C0J1 378 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 ENKD1Q9H0I2 346 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 C12orf10Q9HB07 376 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 CCNB1IP1Q9NPC3 277 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 FKBP14Q9NWM8 211 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 DNAJC27Q9NZQ0 273 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 KLRF1Q9NZS2 232 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 FBXL4Q9UKA2 621 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 PCSK5Q92824 1860 aa15.37■□□□□ 0.05
CLN3-252ENST00000636907 MUC6Q6W4X9 2439 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 TRAV27A0A087WT01 109 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 B4DXG7 233 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 RGS10O43665 173 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 CH25HO95992 272 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 HPP00738 406 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 MT-ND2P03891 347 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 PTGDSP41222 190 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 GABREP78334 506 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 C17orf67Q0P5P2 114 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 Q0VFX4 171 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 IL10RAQ13651 578 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 PGGHGQ32M88 737 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 OR5M10Q6IEU7 315 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 TMPRSS12Q86WS5 348 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 CACTIN-AS1Q8N1I8 211 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 OR2T33Q8NG76 320 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 SIGLEC11Q96RL6 698 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 TMEM43Q9BTV4 400 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 SLC19A3Q9BZV2 496 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 CDCP1Q9H5V8 836 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 HHATLQ9HCP6 504 aa15.36■□□□□ 0.05
CLN3-252ENST00000636907 CLCA1A8K7I4 914 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 LRRN3E7EW58 273 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 STMND1H3BQB6 276 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 HCN1O60741 890 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 RCBTB2O95199 551 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 WISP1O95388 367 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 GP1BBP13224 206 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 JUNBP17275 347 aaPredicted RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 CSRP1P21291 193 aaKnown RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 PCMT1P22061 227 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 MLLT10P55197 1068 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 FHL1Q13642 323 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 QPRTQ15274 297 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 ZNF791Q3KP31 576 aaPredicted RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 RPL13AP3Q6NVV1 102 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 SMARCD3Q6STE5 483 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 THSD4Q6ZMP0 1018 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 SLC46A3Q7Z3Q1 461 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 OAFQ86UD1 273 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 RPS19BP1Q86WX3 136 aaKnown RBP15.35■□□□□ 0.05
CLN3-252ENST00000636907 FAM26EQ8N5C1 309 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 OR52L1Q8NGH7 329 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 OR51A7Q8NH64 312 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 TMEM163Q8TC26 289 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 Q96MT0 163 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 SLC38A2Q96QD8 506 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 TNFRSF13CQ96RJ3 184 aa15.35■□□□□ 0.05
CLN3-252ENST00000636907 COPS4Q9BT78 406 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms