RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ZNF175Q9Y473 711 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 RNF115Q9Y4L5 304 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 ATG4BQ9Y4P1 393 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 DYSFO75923 2080 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 MED12LQ86YW9 2145 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 BOD1L1Q8NFC6 3051 aa0.8□□□□□ -2.28
SMARCB1-209ENST00000635578 FASNP49327 2511 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZFHX2Q9C0A1 2572 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DNAH14Q0VDD8 3507 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 A0A0C4DFX4 3053 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 IGSF10Q6WRI0 2623 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 MED12Q93074 2177 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DMDP11532 3685 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DNAJC13O75165 2243 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RTTNQ86VV8 2226 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 TENM4Q6N022 2769 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 HSFX4A0A1B0GTS1 333 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 HSFX3A0A1B0GWH4 333 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 LRIT2A6NDA9 550 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ARHGAP42A6NI28 874 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZFP92A6NM28 416 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DHRS7CA6NNS2 312 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 NPIPA2E9PIF3 369 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 E9PLD3 99 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 F5H6K3 240 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 TLR4O00206 839 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CASC3O15234 703 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 HCRTO43612 131 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CYTH3O43739 400 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 NME2P1O60361 137 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DFNA5O60443 496 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 TSC22D2O75157 780 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RTN2O75298 545 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 STAM2O75886 525 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CIAO1O76071 339 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 GOSR1O95249 250 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 SLC2A10O95528 541 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 TDP2O95551 362 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 PNPP00491 289 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 IGHV3-9P01782 118 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 MMP1P03956 469 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 WNT2P09544 360 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 OR4Q2P0C623 313 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 IQCF3P0C7M6 154 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 PDHBP11177 359 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 VDRP11473 427 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CPN1P15169 458 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 BCKDHBP21953 392 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 FASP25445 335 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RFC2P35250 354 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ATP6V1E1P36543 226 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RPL4P36578 427 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 TNFRSF4P43489 277 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 GNPDA1P46926 289 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DHPSP49366 369 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 NT5C2P49902 561 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 MEOX2P50222 304 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CNN1P51911 297 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZNF133P52736 654 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 SRP54P61011 504 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 SSTP61278 116 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 OSTNP61366 133 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RPS6P62753 249 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RPL32P62910 135 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 HERVK_113P63132 956 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ERVK-8P63133 956 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 KRT83P78385 493 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CCNA1P78396 465 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 NUCB2P80303 420 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 IL9RQ01113 521 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZNF45Q02386 682 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 UBXN1Q04323 297 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZNF33BQ06732 778 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 KLRC3Q07444 240 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 MGAT3Q09327 533 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 C17orf67Q0P5P2 114 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 WASHC5Q12768 1159 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 RPA4Q13156 261 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 SRSF6Q13247 344 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ORC2Q13416 577 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 IL18R1Q13478 541 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 DPYSL3Q14195 570 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 SMC1AQ14683 1233 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 KARSQ15046 597 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ANGPT1Q15389 498 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CD226Q15762 336 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZKSCAN8Q15776 578 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 C2orf76Q3KRA6 126 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 GLYR1Q49A26 553 aaPredicted RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CCDC40Q4G0X9 1142 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 C2orf83Q53S99 150 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CLLU1OSQ5K130 101 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 CELF3Q5SZQ8 465 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 C9orf129Q5T035 196 aaKnown RBP0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ATF7IP2Q5U623 682 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 C12orf60Q5U649 245 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 FKBP1CQ5VVH2 108 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 ZNF544Q6NX49 715 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 PNCKQ6P2M8 343 aa0.79□□□□□ -2.28
SMARCB1-209ENST00000635578 PAMR1Q6UXH9 720 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms