RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PRR14Q9BWN1 585 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 TRIM2Q9C040 744 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 EXO5Q9H790 373 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF337Q9Y3M9 751 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 NBASA2RRP1 2371 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 A0A1B0GWA3 101 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 EFNA2O43921 213 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 SEMA7AO75326 666 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 IL11P20809 199 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 GCKP35557 465 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 HTR3AP46098 478 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 POLR2HP52434 150 aaKnown RBP17.79■□□□□ 0.44
UPF3A-211ENST00000618700 MERTKQ12866 999 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 FKBP9P1Q75LS8 142 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 CADM2Q8N3J6 435 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 TRIM15Q9C019 465 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 CTPS2Q9NRF8 586 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 OSGIN1Q9UJX0 560 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF835Q9Y2P0 537 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 V9GYQ6 96 aa17.79■□□□□ 0.44
UPF3A-211ENST00000618700 ZNHIT1O43257 154 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 STAMBPO95630 424 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 IFNW1P05000 195 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 TACR3P29371 465 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 PTGS2P35354 604 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 APOBEC1P41238 236 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 RAC1P63000 192 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 SELENBP1Q13228 472 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 FLOT2Q14254 428 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 OR1Q1Q15612 314 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 BCL2A1Q16548 175 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 C3orf33Q6P1S2 294 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 TSEN54Q7Z6J9 526 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 ATG4DQ86TL0 474 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 POP5Q969H6 163 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 SARAFQ96BY9 339 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 C7orf34Q96L11 122 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 TIMP4Q99727 224 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 REPIN1Q9BWE0 567 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 AMBRA1Q9C0C7 1298 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 POLR2J2Q9GZM3 115 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 PRDM14Q9GZV8 571 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 POLR2J3Q9H1A7 115 aaKnown RBP17.78■□□□□ 0.44
UPF3A-211ENST00000618700 TNFRSF10DQ9UBN6 386 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 AP4B1Q9Y6B7 739 aa17.78■□□□□ 0.44
UPF3A-211ENST00000618700 A0A0B4J2E0 115 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 A0A1B0GX12 115 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 AQP12BA6NM10 295 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 H3BML4 177 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 BCKDKO14874 412 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 CPN1P15169 458 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF708P17019 499 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 POU3F2P20265 443 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-211ENST00000618700 CLDN18P56856 261 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 ENTPD8Q5MY95 495 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF613Q6PF04 617 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 DEF8Q6ZN54 512 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 Q6ZPB1 254 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-211ENST00000618700 GGNQ86UU5 652 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 ADGRG3Q86Y34 549 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 AQP12AQ8IXF9 295 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 GALNT11Q8NCW6 608 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 LRGUKQ96M69 825 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 TMUB1Q9BVT8 246 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 C12orf10Q9HB07 376 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 TMEM27Q9HBJ8 222 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 RPS6KB2Q9UBS0 482 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 CHRNA9Q9UGM1 479 aa17.77■□□□□ 0.44
UPF3A-211ENST00000618700 RP1L1Q8IWN7 2480 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-211ENST00000618700 POLEQ07864 2286 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 TMED7-TICAM2A0A0A6YYA0 188 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 CPSF4LA6NMK7 179 aaKnown RBP17.76■□□□□ 0.43
UPF3A-211ENST00000618700 NPIPA2E9PIF3 369 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 NPIPA3F8WFD2 350 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 LYPD3O95274 346 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 THY1P04216 161 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 PEPDP12955 493 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 STARP49675 285 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 VLDLRP98155 873 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 RBPJQ06330 500 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 IQCCQ4KMZ1 466 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 ULK3Q6PHR2 472 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 FAM57AQ8TBR7 257 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 ADAMTS16Q8TE57 1224 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 DNAJA4Q8WW22 397 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-211ENST00000618700 WDYHV1Q96HA8 205 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 TMED7Q9Y3B3 224 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 ENPP4Q9Y6X5 453 aa17.76■□□□□ 0.43
UPF3A-211ENST00000618700 TRAPPC13A5PLN9 417 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 SLC19A2O60779 497 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 OR5F1O95221 314 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 SHC1P29353 583 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 CLDN15P56746 228 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 MRPL49Q13405 166 aaKnown RBP17.75■□□□□ 0.43
UPF3A-211ENST00000618700 C3AR1Q16581 482 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.75■□□□□ 0.43
UPF3A-211ENST00000618700 CTU2Q2VPK5 515 aaKnown RBP17.75■□□□□ 0.43
UPF3A-211ENST00000618700 ALG10BQ5I7T1 473 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 POMZP3Q6PJE2 187 aa17.75■□□□□ 0.43
UPF3A-211ENST00000618700 LSRQ86X29 649 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms