RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 C16orf58Q96GQ5 468 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 DUX5Q96PT3 197 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 DOK1Q99704 481 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 PKP2Q99959 881 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 TPK1Q9H3S4 243 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 SLC7A10Q9NS82 523 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 GIN1Q9NXP7 522 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 GRID1Q9ULK0 1009 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 WBP11Q9Y2W2 641 aaKnown RBP10.18□□□□□ -0.78
CLK3-222ENST00000568232 SNX24Q9Y343 169 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 HEATR1Q9H583 2144 aaKnown RBP10.18□□□□□ -0.78
CLK3-222ENST00000568232 TMEM129A0AVI4 362 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 CCDC189A1A4V9 331 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 TTC36A6NLP5 189 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 STX16-NPEPL1H3BU86 382 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 hCG_2039718K7EN88 272 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 SULT2B1O00204 365 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 STX16O14662 325 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 ZNF500O60304 480 aaPredicted RBP10.17□□□□□ -0.78
CLK3-222ENST00000568232 PDE5AO76074 875 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 BCL10O95999 233 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 GAAP10253 952 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 CALCRP30988 508 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 KHKP50053 298 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 HTR6P50406 440 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 QPRTQ15274 297 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 VPS26BQ4G0F5 336 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 FAM71E1Q6IPT2 247 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 KLC3Q6P597 504 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 LRIG3Q6UXM1 1119 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 TMPPEQ6ZT21 453 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 IKBIPQ70UQ0 350 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 MTDHQ86UE4 582 aaKnown RBP10.17□□□□□ -0.78
CLK3-222ENST00000568232 CCDC103Q8IW40 242 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 C17orf78Q8N4C9 275 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 BPIFB2Q8N4F0 458 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 CDRT4Q8N9R6 151 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 OR51F2Q8NH61 342 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 ZNF483Q8TF39 744 aaPredicted RBP10.17□□□□□ -0.78
CLK3-222ENST00000568232 MRRFQ96E11 262 aaKnown RBP10.17□□□□□ -0.78
CLK3-222ENST00000568232 SLC38A2Q96QD8 506 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 KCNS3Q9BQ31 491 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 MIEF1Q9NQG6 463 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 DDX28Q9NUL7 540 aaKnown RBP10.17□□□□□ -0.78
CLK3-222ENST00000568232 MED29Q9NX70 200 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 TAS2R7Q9NYW3 318 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 UPB1Q9UBR1 384 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 DCTN4Q9UJW0 460 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 ACTL7BQ9Y614 415 aa10.17□□□□□ -0.78
CLK3-222ENST00000568232 WNT11O96014 354 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 CRYAAP02489 173 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 ERCC1P07992 297 aaPredicted RBP10.16□□□□□ -0.78
CLK3-222ENST00000568232 RPS17P08708 135 aaKnown RBP10.16□□□□□ -0.78
CLK3-222ENST00000568232 ADRA2AP08913 450 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 NUDT17P0C025 328 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 HSD3B1P14060 373 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 COL8A2P25067 703 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 HSD3B2P26439 372 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 THBS4P35443 961 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SLC1A3P43003 542 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 PDK3Q15120 406 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 LINC01559Q495D7 138 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 TIGD2Q4W5G0 525 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 KLHL26Q53HC5 615 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SPIN4Q56A73 249 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SLC25A53Q5H9E4 307 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-222ENST00000568232 TSPO2Q5TGU0 170 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 GALNT18Q6P9A2 607 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 CASP12Q6UXS9 341 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SZRD1Q7Z422 152 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SPATA21Q7Z572 469 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 CDK20Q8IZL9 346 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 C1orf162Q8NEQ5 155 aaPredicted RBP10.16□□□□□ -0.78
CLK3-222ENST00000568232 TMPRSS13Q9BYE2 586 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SHCBP1LQ9BZQ2 653 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 RACGAP1Q9H0H5 632 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 VPS11Q9H270 941 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 SEC61A2Q9H9S3 476 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 G6PC2Q9NQR9 355 aa10.16□□□□□ -0.78
CLK3-222ENST00000568232 GTPBP1O00178 669 aaKnown RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 ULK1O75385 1050 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 KRT6AP02538 564 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 KRT6BP04259 564 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 SAGP10523 405 aaPredicted RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 GPC1P35052 558 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 GPR6P46095 362 aaPredicted RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 KRT6CP48668 564 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 SUMO3P55854 103 aaPredicted RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 LMO4P61968 165 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 CSNK2A1P68400 391 aaPredicted RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 MRPS25P82663 173 aaKnown RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 NAAAQ02083 359 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 HGFACQ04756 655 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 SRSF4Q08170 494 aaKnown RBP10.15□□□□□ -0.78
CLK3-222ENST00000568232 ZNF763Q0D2J5 394 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 ELFN2Q5R3F8 820 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 C3orf33Q6P1S2 294 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 ANKRD16Q6P6B7 361 aa10.15□□□□□ -0.78
CLK3-222ENST00000568232 KLHL24Q6TFL4 600 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms