RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 POLR2J3Q9H1A7 115 aaKnown RBP4.11□□□□□ -1.75
SRP54-212ENST00000556992 SLC38A1Q9H2H9 487 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 DUSP21Q9H596 190 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 POLR1BQ9H9Y6 1135 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 BCO1Q9HAY6 547 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 EQTNQ9NQ60 294 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 PRTFDC1Q9NRG1 225 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 PLCXD1Q9NUJ7 323 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 NLGN3Q9NZ94 848 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 SEMA5BQ9P283 1151 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 RHCGQ9UBD6 479 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 RSL24D1Q9UHA3 163 aaKnown RBP4.11□□□□□ -1.75
SRP54-212ENST00000556992 ACAD8Q9UKU7 415 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 SATB2Q9UPW6 733 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 WDR45Q9Y484 360 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 PCDHGB1Q9Y5G3 927 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 KCNE3Q9Y6H6 103 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 CEPT1Q9Y6K0 416 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 DSPPQ9NZW4 1301 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 MUC22E2RYF6 1773 aaPredicted RBP4.11□□□□□ -1.75
SRP54-212ENST00000556992 OBSL1O75147 1896 aa4.11□□□□□ -1.75
SRP54-212ENST00000556992 TPRP12270 2363 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 NUP210Q8TEM1 1887 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 TRBV4-1A0A0J9YWV2 114 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 A0A1W2PS29 197 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 SH3PXD2BA1X283 911 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 EME2A4GXA9 379 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 EFCAB10A6NFE3 127 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 SNTNA6NMZ2 147 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CLCA1A8K7I4 914 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 J3KTA2 159 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 AP3D1O14617 1153 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 HCRTR1O43613 425 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 RGS10O43665 173 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 FMO6PO60774 539 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PRAMEF2O60811 474 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 NOL3O60936 208 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 SDC3O75056 442 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 LDB3O75112 727 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 RDH16O75452 317 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 TRMUO75648 421 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 SEC14L2O76054 403 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 NKX2-2O95096 273 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 OR5F1O95221 314 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 ANGPTL1O95841 491 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 IFNA16P05015 189 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CYP4B1P13584 511 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 ITIH1P19827 911 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 S1PR1P21453 382 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 HOXD12P35452 270 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 KRT20P35900 424 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 MAP3K8P41279 467 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 FOLR3P41439 243 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 STT3AP46977 705 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 UGT2B15P54855 530 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PSMD4P55036 377 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 TMBIM6P55061 237 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 TAS2R41P59536 307 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 SNRPGP62308 76 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 PSPHP78330 225 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 POU6F2P78424 691 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 ID2Q02363 134 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CSTF1Q05048 431 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 SIGLEC14Q08ET2 396 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 DMWDQ09019 674 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 TARDBPQ13148 414 aaKnown RBP eCLIP4.1□□□□□ -1.75
SRP54-212ENST00000556992 PMS2P3Q13401 168 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PIN1Q13526 163 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 ZNF267Q14586 743 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 GANABQ14697 944 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 PTGES3Q15185 160 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 DUSP5Q16690 384 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 DECR1Q16698 335 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CTU2Q2VPK5 515 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 HLA-BQ31612 363 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 AMZ1Q400G9 498 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 ENTPD8Q5MY95 495 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 SLC25A30Q5SVS4 291 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 DCST2Q5T1A1 773 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 TYW3Q6IPR3 259 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 C1orf94Q6P1W5 598 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 TMEM71Q6P5X7 295 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PODNL1Q6PEZ8 512 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 ISLR2Q6UXK2 745 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CASP12Q6UXS9 341 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PTCHD4Q6ZW05 846 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PRSS41Q7RTY9 318 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 PRSS42Q7Z5A4 293 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 RANBP3LQ86VV4 465 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 RBM45Q8IUH3 476 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 ERI1Q8IV48 349 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 P3H2Q8IVL5 708 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 CDK20Q8IZL9 346 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 RNF113BQ8IZP6 322 aaKnown RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 ZNF619Q8N2I2 560 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 COX18Q8N8Q8 333 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 Q8N9G6 341 aaPredicted RBP4.1□□□□□ -1.75
SRP54-212ENST00000556992 ZNF540Q8NDQ6 660 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 OR6T1Q8NGN1 323 aa4.1□□□□□ -1.75
SRP54-212ENST00000556992 VANGL1Q8TAA9 524 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms