RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ZNF613Q6PF04 617 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 ULK3Q6PHR2 472 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 POMZP3Q6PJE2 187 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 GFRALQ6UXV0 394 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 TSEN54Q7Z6J9 526 aaKnown RBP11.05□□□□□ -0.64
SHMT2-209ENST00000553949 ADGRG3Q86Y34 549 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 CHERPQ8IWX8 916 aaKnown RBP11.05□□□□□ -0.64
SHMT2-209ENST00000553949 ST6GALNAC3Q8NDV1 305 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 ADAMTS16Q8TE57 1224 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 C3orf49Q96BT1 292 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 SARAFQ96BY9 339 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 SLC47A1Q96FL8 570 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 C7orf34Q96L11 122 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 SEPHS2Q99611 448 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 TIMP4Q99727 224 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 POLR2J2Q9GZM3 115 aaKnown RBP11.05□□□□□ -0.64
SHMT2-209ENST00000553949 POLR2J3Q9H1A7 115 aaKnown RBP11.05□□□□□ -0.64
SHMT2-209ENST00000553949 MAGIXQ9H6Y5 334 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 TMEM185BQ9H7F4 350 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 IL1RAPQ9NPH3 570 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 SERINC1Q9NRX5 453 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 NDUFAF4Q9P032 175 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 TMED7Q9Y3B3 224 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 ENPP4Q9Y6X5 453 aa11.05□□□□□ -0.64
SHMT2-209ENST00000553949 TCRBV3S1A0A5B6 114 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 DHRS12A0PJE2 317 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 TRAPPC13A5PLN9 417 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 NPIPA2E9PIF3 369 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 NPIPA3F8WFD2 350 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 J3KTA2 159 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 OR5F1O95221 314 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 THY1P04216 161 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 FABP3P05413 133 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 GPIP06744 558 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 PNMTP11086 282 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 UMPSP11172 480 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 PEPDP12955 493 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ITGA2P17301 1181 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CCNA2P20248 432 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CXCR1P25024 350 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 PTGS2P35354 604 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 LHX2P50458 406 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ERFP50548 548 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CDH12P55289 794 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CLDN18P56856 261 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 RAC1P63000 192 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 VLDLRP98155 873 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CHRNB3Q05901 458 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SELENBP1Q13228 472 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 PIN1Q13526 163 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CCNIQ14094 377 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 BCL2A1Q16548 175 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 FAM98BQ52LJ0 330 aaKnown RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SWT1Q5T5J6 900 aaKnown RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 C3orf33Q6P1S2 294 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ATG4DQ86TL0 474 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CYP4Z1Q86W10 505 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 LSRQ86X29 649 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ADGRG5Q8IZF4 528 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 LILRA2Q8N149 483 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ATP6V1C2Q8NEY4 427 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CANT1Q8WVQ1 401 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SMPDL3BQ92485 455 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 MIB2Q96AX9 1013 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SLC41A3Q96GZ6 507 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 PRRC1Q96M27 445 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ZNF300Q96RE9 604 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 C12orf10Q9HB07 376 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SELENONQ9NZV5 590 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 STOML1Q9UBI4 398 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 CHRNA9Q9UGM1 479 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 ACAD8Q9UKU7 415 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 A4GNTQ9UNA3 340 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 AURKCQ9UQB9 309 aa11.04□□□□□ -0.64
SHMT2-209ENST00000553949 SPIN1Q9Y657 262 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-209ENST00000553949 TMEM72A0PK05 275 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ELOA3DA6NLF2 546 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-209ENST00000553949 FFAR1O14842 300 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 BCKDKO14874 412 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ZNF208O43345 1280 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 CHP2O43745 196 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 LYPD3O95274 346 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 OPN1LWP04000 364 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 CPN1P15169 458 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ZNF708P17019 499 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 RHCEP18577 417 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 SHC1P29353 583 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 IFNA8P32881 189 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 MAP2K6P52564 334 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 SUCLG1P53597 346 aaKnown RBP11.03□□□□□ -0.64
SHMT2-209ENST00000553949 CLDN20P56880 219 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ACTR3P61158 418 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 RBPJQ06330 500 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ELOA3BQ3SY89 546 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 IQCCQ4KMZ1 466 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 GDF7Q7Z4P5 450 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 GGNQ86UU5 652 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 ELOA3Q8NG57 546 aa11.03□□□□□ -0.64
SHMT2-209ENST00000553949 RNF217Q8TC41 542 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms