RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ITGA3P26006 1051 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 FKBP2P26885 142 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ABCD3P28288 659 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 HTR3AP46098 478 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 OR1E2P47887 323 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PTDSS1P48651 473 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 HSPA13P48723 471 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ERFP50548 548 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 EFNA3P52797 238 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 HMGA2P52926 109 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RAD23AP54725 363 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SOX8P57073 446 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SESN3P58005 492 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TAS2R41P59536 307 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 GPR85P60893 370 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RPS18P62269 152 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 EEF1A1P68104 462 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SPIBQ01892 262 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 FUT5Q11128 374 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TRAM2Q15035 370 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TAF11Q15544 211 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TRIP10Q15642 601 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 NTRK2Q16620 822 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RFX4Q33E94 735 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 COLEC12Q5KU26 742 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 DCAF10Q5QP82 559 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 DCST1Q5T197 706 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PDZK1Q5T2W1 519 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 MRPL2Q5T653 305 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ABHD17BQ5VST6 288 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SLC22A10Q63ZE4 541 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PPP4R4Q6NUP7 873 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SLC30A6Q6NXT4 461 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TMEM81Q6P7N7 255 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 DEF8Q6ZN54 512 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ZNF836Q6ZNA1 936 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 VTCN1Q7Z7D3 282 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 AMIGO2Q86SJ2 522 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 MRGPREQ86SM8 312 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RNF113BQ8IZP6 322 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 CELF2-AS1Q8N7Q2 184 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ICA1LQ8NDH6 482 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 OR4N2Q8NGD1 307 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 OR4C3Q8NH37 302 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 GIPC3Q8TF64 312 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 THAP3Q8WTV1 239 aaPredicted RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PHF10Q8WUB8 498 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 KCNE4Q8WWG9 221 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 DNAJC9Q8WXX5 260 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TMEM234Q8WY98 164 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SLC38A4Q969I6 547 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SLCO4A1Q96BD0 722 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 EFHD2Q96C19 240 aaPredicted RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ZG16BQ96DA0 208 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PRRC1Q96M27 445 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 LMF1Q96S06 567 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 KCNJ15Q99712 375 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PIP5K1AQ99755 562 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ARHGDIGQ99819 225 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PKP2Q99959 881 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RBM4BQ9BQ04 359 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 RBM4Q9BWF3 364 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SCNM1Q9BWG6 230 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 JAM3Q9BX67 310 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 AMBRA1Q9C0C7 1298 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 SEMA6AQ9H2E6 1030 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 Q9H521 79 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PTGES2Q9H7Z7 377 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ZNF556Q9HAH1 456 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 EXOSC3Q9NQT5 275 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 FBXO34Q9NWN3 711 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 NDUFAF4Q9P032 175 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 NKX1-2Q9UD57 310 aaPredicted RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 TESQ9UGI8 421 aaKnown RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 ZNF223Q9UK11 482 aaPredicted RBP4.58□□□□□ -1.68
VTI1B-202ENST00000553619 FBXL4Q9UKA2 621 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 DTX4Q9Y2E6 619 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 PCDHGB6Q9Y5F9 930 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 MUC6Q6W4X9 2439 aa4.58□□□□□ -1.68
VTI1B-202ENST00000553619 UNC80Q8N2C7 3258 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 COL6A3P12111 3177 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 TRAPPC13A5PLN9 417 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 CDHR4A6H8M9 788 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 TMEM200CA6NKL6 621 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 NPIPB9F8W1W9 429 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 hCG_2039718K7EN88 272 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 FAAHO00519 579 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 AQP7O14520 342 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 PRKNO60260 465 aaPredicted RBP4.57□□□□□ -1.68
VTI1B-202ENST00000553619 FADS1O60427 444 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 UGT2B11O75310 529 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 NME6O75414 186 aaPredicted RBP4.57□□□□□ -1.68
VTI1B-202ENST00000553619 CCNB2O95067 398 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 SNX4O95219 450 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 OR5F1O95221 314 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 NADKO95544 446 aaPredicted RBP4.57□□□□□ -1.68
VTI1B-202ENST00000553619 ANGPTL1O95841 491 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 IGKV1D-16P01601 117 aa4.57□□□□□ -1.68
VTI1B-202ENST00000553619 CAPNS1P04632 268 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms